Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1162 ATGGCCGAGGAAGCCAAAGCCAAAGGCAACGCGGCATTCTCCGCCGGCGACTTCGCCGCCGCGGTCCGCCACTTCTCGGACGCCATCGCCCTTTCCCCCTCCAACCACGTTCTCTACTCCAACCGATCCGCCGCCCACGCCTCCCTCCAGAACTACGCGGAGGCCCTAGCCGACGCCCAGAAGACCGTCGACCTCAAGCCCGACTGGCCCAAGGCCTACAGCCGCCTCGGCGCCGCCCACCTCGGCCTCCGCCGCCACCGCGACGCCTTCTCCGCCTACAAAACCGGCCTCCAACTCGACCCCGACAATGCCGCCCTCAAATCCGGCCTTGCCGATGCCCAGGCCGCAGCCTCCCGCCCTCCCCCCACCAGCCCCTTCGCCACCGCCTTCTCCGGCCCCGACATGTGGGCCCGCCTCACCGCCGACCCCACCGCACGTGCCAACCTCCAGGACCCCGAGTTCGTCAAGATCATGCAGGACATCCAGAAGGACCCCAACAAGTTCAACCTGCATTTGAGTGATCAGAGAGTCATGCATGCCATTGGGGTTTTGCTCAATGTCAAAATTCAAACCCCTAACCACGACGAAAACGACCACGATGCCGATGATGACGTGTCCGAGGATGAGGTTGTTTCCCAGCCCGAATCTGAACACGAGCCTGAAGCGGCGGTGGAAGTGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGACGAGGGATAGGAAAGGGCAGGCTCAGAAGGAGAAGGAAGCTGGCAATGCTGCTTACAAGAAGAAGGATTTTGAAACCGCGATTGGACATTACAGCAAGGCTTTGGAGTTGGATGATGAGGATATTTCCTACCTTACTAATCGTGCTGCAGTTTACTTGGAGATGGGAAAGTTTGAGGACTGCATAAAGGATTGTGAAAAGGCTGTTGAGAGGGGAAAAGAACTAAGATCAGATTACAAGATGATAGCAAGAGCTTTGACAAGGAAAGGTACTGCATTGGCTAAAATGGCTAAATGCTCTAAGGATTTTGAACCTGCCATTGAGATTTTCCAGAAAGCACTTACAGAGAACCGCAACCCAGACACCTTGAAGAAACTGAACGAAGCTGAAAAGGCTAAGAAAGAACTAGAGCAACAAGAATATTTTGATCCAAAATTAGCTGATGAGGCGAGAGAAAAAGGAAATGAATTATTCAAGCAGCAGAAGTATCCTGAGGCTACGAAGCATTATACAGAAGCTATAAAAAGGAACCCAAAAGATGCTAAGGCTTATAGTAACAGAGCTGCATGCTATACAAAACTGGGGGCAATGCCCGAAGGCTTAAAAGATGCAGAGAAATGCATTGAGCTTGATCCAACCTTTTCAAAGGGTTATACTAGGAAAGGTGCAGTGCAGTTTTCCATGAAAGAATATGACAAAGCTTTGGAAACATACAGGGAGGGTTTGAAACATGATCCTAACAATCAGGAATTGCTTGATGGCATAAGAAGATGTGTAGAACAAATTAATAAGGCTAGCCGTGGAGATTTTACACCTGAGGAGTTAAAGGAGAGACAGGCCAAGGCAATGCAAGACCCAGAGATACAAAGCATTCTGCAAGACCCTGTTATGACACAAGTATTGACTGATTTCCAGGAAAATCCCAGAGCTGCAGAGGAACATGTGAAGAATCCAATGGTGATGAACAAGATTCAAAAGCTGATCAGTGCCGGGATTGTCCAGATGAGATGA 1728 0.5122 MAEEAKAKGNAAFSAGDFAAAVRHFSDAIALSPSNHVLYSNRSAAHASLQNYAEALADAQKTVDLKPDWPKAYSRLGAAHLGLRRHRDAFSAYKTGLQLDPDNAALKSGLADAQAAASRPPPTSPFATAFSGPDMWARLTADPTARANLQDPEFVKIMQDIQKDPNKFNLHLSDQRVMHAIGVLLNVKIQTPNHDENDHDADDDVSEDEVVSQPESEHEPEAAVEVAEEEEEEEEEEKETRDRKGQAQKEKEAGNAAYKKKDFETAIGHYSKALELDDEDISYLTNRAAVYLEMGKFEDCIKDCEKAVERGKELRSDYKMIARALTRKGTALAKMAKCSKDFEPAIEIFQKALTENRNPDTLKKLNEAEKAKKELEQQEYFDPKLADEAREKGNELFKQQKYPEATKHYTEAIKRNPKDAKAYSNRAACYTKLGAMPEGLKDAEKCIELDPTFSKGYTRKGAVQFSMKEYDKALETYREGLKHDPNNQELLDGIRRCVEQINKASRGDFTPEELKERQAKAMQDPEIQSILQDPVMTQVLTDFQENPRAAEEHVKNPMVMNKIQKLISAGIVQMR* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1162 575 ProSiteProfiles TPR repeat profile. 420 453 IPR019734 GO:0005515
Gso17g1162 575 PANTHER HSP70-HSP90 ORGANIZING PROTEIN 3 1 574 - -
Gso17g1162 575 Gene3D - 506 575 - -
Gso17g1162 575 Pfam STI1 domain 133 186 IPR041243 -
Gso17g1162 575 Pfam STI1 domain 516 567 IPR041243 -
Gso17g1162 575 ProSiteProfiles TPR repeat profile. 454 487 IPR019734 GO:0005515
Gso17g1162 575 ProSiteProfiles TPR repeat profile. 247 280 IPR019734 GO:0005515
Gso17g1162 575 MobiDBLite consensus disorder prediction 238 256 - -
Gso17g1162 575 SMART CBM 142 181 IPR006636 -
Gso17g1162 575 SMART CBM 524 563 IPR006636 -
Gso17g1162 575 Gene3D Tetratricopeptide repeat domain 385 505 IPR011990 GO:0005515
Gso17g1162 575 ProSiteProfiles TPR repeat profile. 386 419 IPR019734 GO:0005515
Gso17g1162 575 Gene3D Tetratricopeptide repeat domain 1 116 IPR011990 GO:0005515
Gso17g1162 575 Gene3D - 122 190 - -
Gso17g1162 575 Pfam Tetratricopeptide repeat 7 68 - -
Gso17g1162 575 Pfam Tetratricopeptide repeat 455 487 IPR001440 GO:0005515
Gso17g1162 575 Pfam TPR repeat 393 434 - -
Gso17g1162 575 Pfam TPR repeat 254 295 - -
Gso17g1162 575 ProSiteProfiles TPR repeat region circular profile. 454 487 - -
Gso17g1162 575 Gene3D Tetratricopeptide repeat domain 244 380 IPR011990 GO:0005515
Gso17g1162 575 MobiDBLite consensus disorder prediction 192 256 - -
Gso17g1162 575 Coils Coil 358 378 - -
Gso17g1162 575 SUPERFAMILY TPR-like 8 493 IPR011990 GO:0005515
Gso17g1162 575 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Gso17g1162 575 Coils Coil 223 250 - -
Gso17g1162 575 SMART tpr_5 247 280 IPR019734 GO:0005515
Gso17g1162 575 SMART tpr_5 386 419 IPR019734 GO:0005515
Gso17g1162 575 SMART tpr_5 420 453 IPR019734 GO:0005515
Gso17g1162 575 SMART tpr_5 2 35 IPR019734 GO:0005515
Gso17g1162 575 SMART tpr_5 281 314 IPR019734 GO:0005515
Gso17g1162 575 SMART tpr_5 70 103 IPR019734 GO:0005515
Gso17g1162 575 SMART tpr_5 322 359 IPR019734 GO:0005515
Gso17g1162 575 SMART tpr_5 36 69 IPR019734 GO:0005515
Gso17g1162 575 SMART tpr_5 454 487 IPR019734 GO:0005515
Gso17g1162 575 MobiDBLite consensus disorder prediction 222 237 - -
Gso17g1162 575 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Gso17g1162 575 PANTHER TPR REPEAT CONTAINING PROTEIN 1 574 IPR045248 GO:0006457|GO:0030544|GO:0051879
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1162 Gso-Chr17 11124622 11128295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1162 1 81 U-box Gene Family AT3G07370 34.568 1.05e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1162 K09553 - gmx:547932 1043.88