Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1161 ATGGCGGCAGAGTCATCACTGAGGGTGGCGACTCCCACTCTTTGCAACCTCAATGGGTCTCAGAGACGACCAACCACCACCACTCTCTCTCCGCTTCGCTTCATGGGTTTTCGTCCTCGACCCTCCTCTCACTCTCTCACCTCCTCTTCCCTTTCACACTTCTTCGGGAGCACAAGAATTCACTCCAATTCTTCTTCTTCTTATTCTTCCATTTCACGCCAACATGCTCCGAGAAGAAACTTCTCTGTTTTCGCCATGTCTGCTGATGACGCAAAGCGCAGTGTTCCATTGAAGGATTATCGCAACATCGGTATCATGGCTCACATAGATGCTGGAAAGACTACTACAACAGAACGAATTTTGTACTATACTGGAAGGAACTACAAAATTGGAGAGGTGCATGAGGGAACAGCAACCATGGACTGGATGGAACAAGAACAAGAGAGGGGGATTACCATTACTTCTGCTGCAACCACTACATTTTGGAACAAGCACCGGATCAACATTATTGATACCCCTGGTCACGTTGACTTCACCTTAGAAGTGGAGCGTGCTCTTAGGGTGTTGGATGGAGCTATATGCTTGTTTGACAGTGTTGCTGGCGTGGAGCCGCAATCGGAAACTGTGTGGAGGCAGGCTGATAAATATGGAGTCCCGCGAATTTGTTTTGTCAATAAAATGGACCGTCTTGGAGCAAACTTTTATAGAACAAGAGACATGATAGTAACGAATTTGGGTGCTAAACCACTTGTAATTCAGTTACCAATTGGTTCAGAAGATAACTTTAAGGGAGTTATAGACCTTGTTAGGAATAAGGCTATAGTTTGGTCTGGAGAAGAGCTGGGTGCCAAGTTTGATATTGTAGATATTCCAGAAGATCTTCAAGAGCAGGCTCAGGATTACCGTGCCCAGATGATAGAAAACATAGTTGAGTTTGATGACCAGGCTATGGAGAACTACCTGGAAGGAATTGAACCGGATGAGGAAACTATAAAAAAATTAATTAGGAAGGGAACAATATCAGCCAGTTTTGTGCCAGTGATGTGTGGCTCGGCTTTCAAAAACAAGGGAGTCCAACCATTGCTCGATGCAGTAGTGGATTATCTACCATCACCACTTGACTTGCCAGCAATGAAGGGCAGTGACCCTGAAAACCCTGAAGCAACAATAGAGAGACTAGCAAGTGATGATGAACCATTTGCTGGACTAGCTTTTAAGATCATGAGTGATCCATTTGTAGGTTCCCTTACGTTTGTCAGGGTGTATGCTGGAAAGCTAGGTGCTGGGTCTTATGTACTCAATGCAAACAAAGGGAAAAAGGAGAGAATTGGTAGACTTTTAGAAATGCATGCAAACAGCAGAGATGATGTTAAAGTGGCTTTAGCTGGTGATATTATTGCTCTTGCAGGTTTGAAAGATACTATTACAGGTGAAACATTGTGTGACCCTGATAATCCAATCGTGCTCGAGCGGATGGACTTCCCTGATCCTGTTATTAAGGTTGCAATTGAACCGAAAACTAAAGCTGATGTTGACAAGATGGCAACTGGTTTAATCAAACTTGCACAGGAAGACCCTTCTTTCCACTTCTCCCGTGATGAAGAGATAAACCAGACAGTAATTGAAGGAATGGGAGAATTACATCTTGAAATCATTGTTGATCGGCTCAAAAGAGAATTTAAGGTGGAAGCTAACGTTGGTGCCCCCCAAGTAAACTACAGGGAAAGCATTTCCAAAATCTCAGAAGTGAAGTATGTGCACAAGAAACAATCAGGTGGACAGGGTCAGTTTGCAGATATCACTGTCCGGTTTGAACCCATGGACCCAGGTAGTGGATATGAGTTCAAGAGTGAAATCAAAGGAGGTGCTGTACCAAGAGAATACATTCCTGGTGTGATGAAAGGATTGGAAGAGTGTATGAGCAATGGTGTGCTTGCTGGCTTTCCGGTCGTTGATGTACGAGCAGTACTCACAGATGGTTCTTACCATGATGTAGATTCAAGCGTGTTGGCTTTCCAGTTGGCAGCAAGAGGAGCTTTTAGGGAAGGAATAAGAAAAGCTGGACCGAGGATGCTTGAGCCTATAATGAAGGTTGAAGTTGTTACTCCTGAAGAACATCTAGGTGATGTAATTGGGGATCTCAACTCAAGAAGAGGACAGATCAACAGTTTTGGTGACAAACCTGGTGGCCTTAAGGTGGTTGATTCCCTGGTACCTCTTGCTGAGATGTTCCAGTATGTCAGCACACTCAGAGGGATGACAAAGGGCCGTGCATCCTACACAATGCAATTAGCCATGTTTGATGTGGTGCCTCAGCACATTCAGAACCAACTTGCCACCAAAGAGCAAGAAGTTGCCGCTTAA 2364 0.445 MAAESSLRVATPTLCNLNGSQRRPTTTTLSPLRFMGFRPRPSSHSLTSSSLSHFFGSTRIHSNSSSSYSSISRQHAPRRNFSVFAMSADDAKRSVPLKDYRNIGIMAHIDAGKTTTTERILYYTGRNYKIGEVHEGTATMDWMEQEQERGITITSAATTTFWNKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAGVEPQSETVWRQADKYGVPRICFVNKMDRLGANFYRTRDMIVTNLGAKPLVIQLPIGSEDNFKGVIDLVRNKAIVWSGEELGAKFDIVDIPEDLQEQAQDYRAQMIENIVEFDDQAMENYLEGIEPDEETIKKLIRKGTISASFVPVMCGSAFKNKGVQPLLDAVVDYLPSPLDLPAMKGSDPENPEATIERLASDDEPFAGLAFKIMSDPFVGSLTFVRVYAGKLGAGSYVLNANKGKKERIGRLLEMHANSRDDVKVALAGDIIALAGLKDTITGETLCDPDNPIVLERMDFPDPVIKVAIEPKTKADVDKMATGLIKLAQEDPSFHFSRDEEINQTVIEGMGELHLEIIVDRLKREFKVEANVGAPQVNYRESISKISEVKYVHKKQSGGQGQFADITVRFEPMDPGSGYEFKSEIKGGAVPREYIPGVMKGLEECMSNGVLAGFPVVDVRAVLTDGSYHDVDSSVLAFQLAARGAFREGIRKAGPRMLEPIMKVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPGGLKVVDSLVPLAEMFQYVSTLRGMTKGRASYTMQLAMFDVVPQHIQNQLATKEQEVAA* 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1161 787 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 98 373 IPR000795 GO:0003924|GO:0005525
Gso17g1161 787 CDD EFG_mtEFG1_IV 573 688 IPR005517 GO:0005525
Gso17g1161 787 CDD EFG_III 495 570 IPR009022 -
Gso17g1161 787 Gene3D - 575 778 IPR014721 -
Gso17g1161 787 Coils Coil 778 787 - -
Gso17g1161 787 MobiDBLite consensus disorder prediction 14 32 - -
Gso17g1161 787 Pfam Elongation factor Tu domain 2 414 481 IPR004161 GO:0005525
Gso17g1161 787 Gene3D Elongation Factor G (Translational Gtpase), domain 3 498 574 - -
Gso17g1161 787 SUPERFAMILY EF-G C-terminal domain-like 693 782 IPR035647 -
Gso17g1161 787 SMART EFG_IV_2 570 688 IPR005517 GO:0005525
Gso17g1161 787 SUPERFAMILY EF-G C-terminal domain-like 494 571 IPR035647 -
Gso17g1161 787 TIGRFAM EF-G: translation elongation factor G 93 782 IPR004540 GO:0003746|GO:0005525|GO:0006414
Gso17g1161 787 Hamap Elongation factor G [fusA]. 96 782 IPR004540 GO:0003746|GO:0005525|GO:0006414
Gso17g1161 787 Pfam Elongation Factor G, domain III 494 567 IPR041095 -
Gso17g1161 787 SUPERFAMILY Ribosomal protein S5 domain 2-like 569 689 IPR020568 -
Gso17g1161 787 Gene3D Translation factors 382 497 - -
Gso17g1161 787 PRINTS GTP-binding elongation factor signature 102 115 IPR000795 GO:0003924|GO:0005525
Gso17g1161 787 PRINTS GTP-binding elongation factor signature 148 156 IPR000795 GO:0003924|GO:0005525
Gso17g1161 787 PRINTS GTP-binding elongation factor signature 168 178 IPR000795 GO:0003924|GO:0005525
Gso17g1161 787 PRINTS GTP-binding elongation factor signature 184 195 IPR000795 GO:0003924|GO:0005525
Gso17g1161 787 PRINTS GTP-binding elongation factor signature 220 229 IPR000795 GO:0003924|GO:0005525
Gso17g1161 787 CDD EFG_mtEFG_C 693 771 IPR035649 -
Gso17g1161 787 PANTHER RIBOSOME-RELEASING FACTOR 2, MITOCHONDRIAL 81 780 - -
Gso17g1161 787 Pfam Elongation factor Tu GTP binding domain 99 371 IPR000795 GO:0003924|GO:0005525
Gso17g1161 787 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 371 IPR027417 -
Gso17g1161 787 Hamap Elongation factor G, chloroplastic. 90 787 IPR030848 GO:0003746|GO:0006414|GO:0009507
Gso17g1161 787 TIGRFAM small_GTP: small GTP-binding protein domain 100 270 IPR005225 GO:0005525
Gso17g1161 787 PANTHER TRANSLATION ELONGATION FACTOR G-RELATED 81 780 - -
Gso17g1161 787 Pfam Elongation factor G, domain IV 569 687 IPR005517 GO:0005525
Gso17g1161 787 SUPERFAMILY Translation proteins 354 494 IPR009000 -
Gso17g1161 787 CDD EFG_mtEFG_II 400 482 - -
Gso17g1161 787 CDD EF-G 102 372 - -
Gso17g1161 787 MobiDBLite consensus disorder prediction 14 34 - -
Gso17g1161 787 SMART EFG_C_a 690 778 IPR000640 -
Gso17g1161 787 Pfam Elongation factor G C-terminus 691 777 IPR000640 -
Gso17g1161 787 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 141 156 IPR031157 -
Gso17g1161 787 Gene3D - 91 381 IPR027417 -
Gso17g1161 787 Gene3D - 694 765 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1161 Gso-Chr17 11120047 11123978 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1161 416 577 Eukaryotic Initiation Factors Gene Family AT3G22980 32.022 1.73e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1161 K02355 - gmx:100797377 1509.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0470 5 4999914 5003818 Gso17g1161 17 11120047 11123978 GST