Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1160 ATGGCATCAAAACTACTACTAAGCCTTTCTCTGCTACTCCTAACTCTCACCCTCCACACGTCTTGCACCACCGCACTTGCCAAACGAACCAACCCAAACCCAACAATAACAACAACAACAGACTTCATCAAGTCCTCATGCAAGGCCACGCGCTACCCCGCCGCGTGCGTGCAAACCCTCTCGGGCCACGCCAGCGCGATCCGCCAGAGCGAGCAGCAACTCGCCGTCACGGCTCTCTCCGTGAGCGTGTCCAAGACGCGCTCATGCGCGTCGTTCGTGAAGAGAATGGGCTCCGTGAAGGGAATGAAGCCCAGAGAGTACAACGCACTGCGTGACTGCGTGGAGAACATGAACGACAGCGTGGACCGTCTCAGCCAGTCGGTGAAGGAGCTCGGGCTCGTCATGGGTAAGGGCAAGGGTAAGAAGGACTTTACGTGGCATGTGAGTAATGTTCAGACTTGGGTTAGCGCTGCCATCACTGATCAGGACACGTGTCTTGATGGGTTTGATGGGCCCCACGTGGACGCCAACTTGAGGGCTTCCGTTAGGCCCAGGGTTGTGGATGCTTCTCAGGTCACTAGTAACGCTCTTGCACTGGTTAATCGCTTTGCCTCCAAGTATCGTTCTGCTTCGCAAACTTAA 642 0.5561 MASKLLLSLSLLLLTLTLHTSCTTALAKRTNPNPTITTTTDFIKSSCKATRYPAACVQTLSGHASAIRQSEQQLAVTALSVSVSKTRSCASFVKRMGSVKGMKPREYNALRDCVENMNDSVDRLSQSVKELGLVMGKGKGKKDFTWHVSNVQTWVSAAITDQDTCLDGFDGPHVDANLRASVRPRVVDASQVTSNALALVNRFASKYRSASQT* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1160 213 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 203 IPR035513 -
Gso17g1160 213 CDD PMEI-like_3 45 205 - -
Gso17g1160 213 Pfam Plant invertase/pectin methylesterase inhibitor 41 199 IPR006501 GO:0004857
Gso17g1160 213 SMART PMEI_2 38 199 IPR006501 GO:0004857
Gso17g1160 213 PANTHER PECTINESTERASE INHIBITOR-LIKE 18 207 - -
Gso17g1160 213 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 203 IPR035513 -
Gso17g1160 213 PANTHER PECTINESTERASE INHIBITOR 9 18 207 - -
Gso17g1160 213 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 201 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1160 Gso-Chr17 11107738 11108679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1160 24 200 Carbohydrate Esterase AT3G14310 29.050 7.83e-22 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1160 - - gmx:100789460 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0469 5 4984650 4985501 Gso17g1160 17 11107738 11108679 GST