Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1130 ATGATTTTATTGCACGTATATGTAATTAATAATTTAGACAAGAAAAGGAGAGGGCTTTATATAAAGGTGGGTGGGGTGTGGGGCTTTTTGGGTCATTACTCATTACAAGCTAGTGTTGGTAAGACTTTTGCATTTAGTTTGGGGAATTGCAATATTGGTCAGCTAGCTAGGAAGTGGTGTTGTTTTTGTGTTAGTGCTATGGGAAGGCAACCCTGCTGTGACAAACTTGGGGTGAAGAAGGGTCCATGGACTGCTGAGGAAGACAAGAAGCTCATCAACTTCATTCTCACCAATGGCCAATGCTGTTGGCGCGCCGTGCCAAAGCTCGCTGGCCTCAAGCGCTGTGGCAAGAGTTGTCGCCTTCGTTGGACGAATTATCTTCGTCCAGACTTGAAGAGAGGGCTACTCACAGAGGCAGAGGAGCAACTTGTTATTGATCTCCATGCCCGTCTTGGCAACAGGTGGTCCAAGATTGCTGCCAGGTTACCCGGAAGAACAGACAATGAGATTAAAAATCATTGGAACACCCATATCAAGAAAAAACTCCTTAAGATAGGTATTGATCCCGTTACTCATGAGCCTCTCAAAAAACAAGCTGCAGCATCTTCTCAGGATAGTTCATCCTCCCCTGCAGAGCATTTGCCGCAACCTGGCAATAACCTTGATGATCAGGTCAAAGAAACTGAAGGGATTCTTCTCAACTCAGAGGAGAATTCAAGTTCATCACAAGCTGAAAATTCTTCTGGGGATGATTCACTTTTGCTAGATAGCATTTGCAGCGACGATTCTCTATTAAACAGCATGTGGCTGGATGAAACTCCTCTGGTGGAAGCATTATGGGACACAACACCTAACCTTGAGAATACTAGTAATAACATGGGTTTGTTACCATCTTGGGAGGATAATTGTGCTTGGTTATTGGACTGTCAAGACTTTGGTATTCATGATTTTGGGTTTACCTGTTTCAACGAGATAGAGTCACATGCACTGCAAACTATAGGAATGAAGGAAGAGGGGCATTAG 1023 0.4399 MILLHVYVINNLDKKRRGLYIKVGGVWGFLGHYSLQASVGKTFAFSLGNCNIGQLARKWCCFCVSAMGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLKRCGKSCRLRWTNYLRPDLKRGLLTEAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKIGIDPVTHEPLKKQAAASSQDSSSSPAEHLPQPGNNLDDQVKETEGILLNSEENSSSSQAENSSGDDSLLLDSICSDDSLLNSMWLDETPLVEALWDTTPNLENTSNNMGLLPSWEDNCAWLLDCQDFGIHDFGFTCFNEIESHALQTIGMKEEGH* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1130 340 Gene3D - 78 133 - -
Gso17g1130 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 127 IPR017930 -
Gso17g1130 340 MobiDBLite consensus disorder prediction 197 215 - -
Gso17g1130 340 ProSiteProfiles Myb-like domain profile. 128 178 IPR001005 -
Gso17g1130 340 ProSiteProfiles Myb-like domain profile. 75 127 IPR001005 -
Gso17g1130 340 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 68 325 - -
Gso17g1130 340 CDD SANT 82 127 IPR001005 -
Gso17g1130 340 SUPERFAMILY Homeodomain-like 77 174 IPR009057 -
Gso17g1130 340 MobiDBLite consensus disorder prediction 195 223 - -
Gso17g1130 340 PANTHER PROTEIN ODORANT1-LIKE 68 325 - -
Gso17g1130 340 CDD SANT 137 178 IPR001005 -
Gso17g1130 340 SMART sant 132 180 IPR001005 -
Gso17g1130 340 SMART sant 79 129 IPR001005 -
Gso17g1130 340 Pfam Myb-like DNA-binding domain 80 127 IPR001005 -
Gso17g1130 340 Pfam Myb-like DNA-binding domain 137 177 IPR001005 -
Gso17g1130 340 Gene3D - 137 212 - -
Gso17g1130 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 182 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1130 Gso-Chr17 10788822 10791095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1130 67 319 MYB Transcription Factor Family AT4G22680 57.678 1.31e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso17g1130 Myb_DNA-binding 3.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1130 K09422 - gmx:100786965 531.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0434 5 4595258 4598747 Gso17g1130 17 10788822 10791095 GST