Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1124 ATGGCTGCAACGCTTCAACATTGTAGCTTCTTGTTGATAACAACATTTACATGGATGTTCATATTAATCATCGGAAAGCCACCAATAGTAGCGGGTACATTTCAGCCTAGTCAATGGACCCTTGCCCATGCCACATTTTATGGTGATGAGTCTGCTTCTGCCACTATGGGAGGAGCATGTGGGTACGGAAATTTGCTCATAAACGGTTACGGGAAAGACACAGCAGCTTTGAGTTCGACATTGTTCAACAACGGGTATGCATGTGGGACTTGTTATCAGATACGTTGTGTTCAATCGAGTGCATGCTATTCCAATGTGCCTTACACTACAGTGACTGCCACAAATCTTTGCCCTCCTAATTGGGCCCAGGCCTCTGATAACGGAGGCTGGTGCAACCCACCACGTACACATTTTGACATGTCCAAGCCCGCTTTCATGAAAATTGCACAGTGGCAAGCTGGAATCATTCCTGTTATGTACCGCAGAGTACCTTGCGTAAGAAGTGGGGGGATACGATTCTCTTTCCAAGGAAACGGGTATTGGTTATTGGTGTACGTGATGAATGTTGGAGGTGGAGGAGATATTGCTAACATGTGGGTGAAGGGAAGTGGAACAGGGTGGATTAGTATGAGCCACAATTGGGGAGCTTCATACCAGGCATTTGCAACATTGGGTGGCCAAGCTCTTTCCTTTAAGGTTACTTCCTACACAACCAAAGAGACTATAATAGCATGGAATGTTGCTCCTACCAACTGGGGCGTAGGACTAACTTATTCCTCCAATGTCAACTTCATTTAA 798 0.4561 MAATLQHCSFLLITTFTWMFILIIGKPPIVAGTFQPSQWTLAHATFYGDESASATMGGACGYGNLLINGYGKDTAALSSTLFNNGYACGTCYQIRCVQSSACYSNVPYTTVTATNLCPPNWAQASDNGGWCNPPRTHFDMSKPAFMKIAQWQAGIIPVMYRRVPCVRSGGIRFSFQGNGYWLLVYVMNVGGGGDIANMWVKGSGTGWISMSHNWGASYQAFATLGGQALSFKVTSYTTKETIIAWNVAPTNWGVGLTYSSNVNFI* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1124 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 170 IPR007112 -
Gso17g1124 265 Pfam Lytic transglycolase 74 160 IPR009009 -
Gso17g1124 265 SUPERFAMILY Barwin-like endoglucanases 38 188 IPR036908 -
Gso17g1124 265 PANTHER EXPANSIN 2 265 - -
Gso17g1124 265 Pfam Expansin C-terminal domain 171 249 IPR007117 -
Gso17g1124 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 180 260 IPR007117 -
Gso17g1124 265 SUPERFAMILY PHL pollen allergen 167 260 IPR036749 -
Gso17g1124 265 PRINTS Expansin signature 69 83 IPR002963 GO:0009664
Gso17g1124 265 PRINTS Expansin signature 109 119 IPR002963 GO:0009664
Gso17g1124 265 PRINTS Expansin signature 128 145 IPR002963 GO:0009664
Gso17g1124 265 PRINTS Expansin signature 145 158 IPR002963 GO:0009664
Gso17g1124 265 PRINTS Expansin signature 169 181 IPR002963 GO:0009664
Gso17g1124 265 PRINTS Expansin signature 181 202 IPR002963 GO:0009664
Gso17g1124 265 PRINTS Expansin signature 216 237 IPR002963 GO:0009664
Gso17g1124 265 PANTHER EXPANSIN-A15 2 265 IPR002963 GO:0009664
Gso17g1124 265 SMART dpbb_1 74 160 IPR007112 -
Gso17g1124 265 Gene3D - 170 265 IPR036749 -
Gso17g1124 265 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576
Gso17g1124 265 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576
Gso17g1124 265 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576
Gso17g1124 265 PRINTS Expansin/Lol pI family signature 153 169 IPR007118 GO:0005576
Gso17g1124 265 PRINTS Expansin/Lol pI family signature 207 221 IPR007118 GO:0005576
Gso17g1124 265 PRINTS Expansin/Lol pI family signature 246 260 IPR007118 GO:0005576
Gso17g1124 265 Gene3D - 28 165 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1124 Gso-Chr17 10741173 10743108 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1124 16 264 Expansin Gene Family AT1G12560 68.675 6.13e-125 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1124 - - gmx:100781459 567.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g1124 17 10741173 10743108 Gso11g0239 11 2016241 2017510 PCT