Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1120 ATGGTGAGGGGGAAAACTCAGATGAAGCGCATCGAAAATGAGACGAGTAGGCAAGTAACGTTCTCCAAGAGAAGGAACGGGTTGCTCAAGAAGGCCTTTGAGCTTTCGGTGCTGTGTGAGGCTGAAGTCGCACTCATCATCTTCTCTACCAGAGGGAGGCTTTATGAGTTCTCCAGTTCAAGATGCTCCAGTGTAAATAAAACAGTTGAACGGTATCAAAGGAAGATCAAGGACCTGGGTGTCAGCAACAAAGGAATCCATGAAAATACACAGCATCTGAAGGAAGGTGATATGAGCATGGCAAAGAAGATCGAGCATCTTGAAGATTCAAGAAGGAAGCTTTTGGGAGATGAATTGGATAAATGCAGTATTGACGAGTTACAACAGCTAGAGAACCAGCTCGAACGCAGCTTGGACAAAATTAGGGCAAGAAAGAATCAATTGTTCAGGGAGCGAATCGAGAACCTAAAACAAGAGGAAAAGTGCTTACTCGAAGTAAATAAACGCTTACGAGAGCAGTATCGGATTGACCGACAACGTTGTTTGAGTGATCAGGATGCTGAACTCGTTACAGAAAAAGAGGCAGAAGAGGTGGAGACGGAGTTATTCATAGGAAGACCTGAGAGAAGAATGCCGTTGAAGTTGAAATCTGCAACACATAGTGCTCATAAATACATAGCGTAA 684 0.4386 MVRGKTQMKRIENETSRQVTFSKRRNGLLKKAFELSVLCEAEVALIIFSTRGRLYEFSSSRCSSVNKTVERYQRKIKDLGVSNKGIHENTQHLKEGDMSMAKKIEHLEDSRRKLLGDELDKCSIDELQQLENQLERSLDKIRARKNQLFRERIENLKQEEKCLLEVNKRLREQYRIDRQRCLSDQDAELVTEKEAEEVETELFIGRPERRMPLKLKSATHSAHKYIA* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1120 227 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Gso17g1120 227 ProSiteProfiles K-box domain profile. 90 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso17g1120 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gso17g1120 227 PANTHER MADS-BOX PROTEIN SOC1 1 209 - -
Gso17g1120 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gso17g1120 227 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Gso17g1120 227 PANTHER MADS BOX PROTEIN 1 209 - -
Gso17g1120 227 Pfam K-box region 89 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso17g1120 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gso17g1120 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gso17g1120 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gso17g1120 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gso17g1120 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gso17g1120 227 Coils Coil 124 173 - -
Gso17g1120 227 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1120 Gso-Chr17 10695871 10704022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1120 1 210 MADS-box Gene Family AT4G22950 58.879 6.30e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso17g1120 K-box 2.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1120 - - gmx:100782713 407.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0424 5 4482109 4489457 Gso17g1120 17 10695871 10704022 GST