Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1119 ATGCAAGAAGCAGGGCTGGGAATGGGAATGGGAATGATGAGCGGAGAAGTATCCGCCGCCGGGGACCACCACCGTCAAGTGAAGGCGGAGATAGCCAACCACCCACTCTATGAACAGCTTCTATCTGCACACGTGTCATGCCTCCGCGTCGCGACACCTATCGATCAGTTGCCGCTCATCGACGGACAGTTATCGCAGTCCCACCATCTCCTCCGCTCTTATGCCTCACACCATTCCCATTCCCTCTCGCCCCATGACCGACAAGAACTTGACAACTTCATGGCACAATATTTGATTGTGTTATGTACGTTCAAAGAGCAGCTTCAGCAACATGTGAGGGTGCATGCCGTGGAGGCTGTGATGGCCTGCCGTGATATTGAAAGTACCTTGCAAGCTCTGACAGGAGTCAGTTTGGGAGAAGGAACAGGTGCAACAATGTCAGATGATGAAGATGATTTGCAGATGGATGGCTCTTTAGATCAGTCTAGCGCTGACGGGCATGACATGATGGGATTTGGTCCATTGCTTCCTACAGAATCTGAAAGGTCCCTGATGGAAAGAGTTCGTCAGGAGCTTAAGATTGAGCTCAAGCAGGGTTTTAAGTCAAGAATTGAAGATGTTAGGGAGGAAATATTAAGGAAGCGGAGAGCTGGGAAATTACCAGGTGACACAACATCGGTTTTAAAGGCCTGGTGGCAGCAACATGCTAAGTGGCCCTACCCAACTGAAGATGACAAGGCAAAACTTGTGGAGGAGACAGGGTTGCAGCTGAAGCAAATCAATAATTGGTTCATCAATCAAAGGAAACGCAACTGGCACAGCAACTCTCAATCGGTTAACTCTCTGAAGTCCAAGCGTAAGAGAGAGTATGCCCACTAA 879 0.4926 MQEAGLGMGMGMMSGEVSAAGDHHRQVKAEIANHPLYEQLLSAHVSCLRVATPIDQLPLIDGQLSQSHHLLRSYASHHSHSLSPHDRQELDNFMAQYLIVLCTFKEQLQQHVRVHAVEAVMACRDIESTLQALTGVSLGEGTGATMSDDEDDLQMDGSLDQSSADGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKAWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVNSLKSKRKREYAH* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1119 292 SUPERFAMILY Homeodomain-like 213 278 IPR009057 -
Gso17g1119 292 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 4 288 - -
Gso17g1119 292 SMART HOX_1 213 278 IPR001356 GO:0003677
Gso17g1119 292 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 4 288 - -
Gso17g1119 292 Pfam Homeobox KN domain 231 270 IPR008422 GO:0003677|GO:0006355
Gso17g1119 292 SMART KNOX1_2 25 69 IPR005540 GO:0003677|GO:0005634
Gso17g1119 292 Pfam KNOX1 domain 27 68 IPR005540 GO:0003677|GO:0005634
Gso17g1119 292 Gene3D - 210 286 - -
Gso17g1119 292 Pfam KNOX2 domain 83 134 IPR005541 GO:0003677|GO:0005634
Gso17g1119 292 SMART KNOX2_2 80 135 IPR005541 GO:0003677|GO:0005634
Gso17g1119 292 CDD homeodomain 214 275 IPR001356 GO:0003677
Gso17g1119 292 ProSiteProfiles ELK domain profile. 191 211 IPR005539 GO:0003677
Gso17g1119 292 ProSiteProfiles 'Homeobox' domain profile. 211 274 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1119 Gso-Chr17 10678469 10684027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1119 1 287 Homeobox Transcription Factor Family AT1G62990 77.133 5.67e-167 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gso17g1119 KNOX2 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1119 - - gmx:100782179 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0423 5 4467866 4474438 Gso17g1119 17 10678469 10684027 GST
Gso17g1119 17 10678469 10684027 Gso11g0235 11 1965927 1972064 PCT