Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1112 ATGAATATTCTCGGACAATCACTCCACCAATCAAACAACGGCAGCTACTCTTGTTCGTCGCCGGAGACTGCAAACTCCTCTAACCTTCCGACCACTCCGAACGCCGTTCACTCCGACGAGGAAGTGAACACATTAGCATCGGCTCATCCTAAGAAACGTGCGGGGCGTCGAATTTTTAAGGAGACAAGGCATCCCGTGTACAGAGGAGTGCGGCGGAGGAACAACAACAAGTGGGTCTGCGAGGTTCGTGTTCCCAACGACAAGTCCACGAGGATTTGGCTCGGAACGTATCCAACGCCTGAGATGGCCGCACGTGCGCACGACGTCGCCGCGCTCTCGCTTCGAGGTAAGTCGGCGTGTCTCAACTTCGCCGACTCGGCGTGGCGGTTGCCCTTGCCGGCGTCGACCAATGCGAAGGAGATTCGGCGCGTGGCGGCGGCGGCTGCTGTAGCGATTGCGGCGGAAGACAGCCGCGGCAAGCAGTTGCGGACTAATGCGATTGATGCCGTTGCTGATTGCGAAGTTAGCAGCAGTGACATAGGCGTCGATGAAAATTGCAATAACAATAAAGCTTCGCAGAGGTTTTGTGATTTGGATGAAATTACAATGCCAGATGCACCGGTTTTTGAGGACATGCATGAGTGGCTTCAGACTATGGCTGCTGAACCATTAAGATCACCTACTTTTGTAACATATGTTAATGTTAGGGATGTCTGGAACTTTGTGGAGGATGATGCTGAGGTTTCCTTGTGGAGCTTCACCGTCTGA 768 0.5326 MNILGQSLHQSNNGSYSCSSPETANSSNLPTTPNAVHSDEEVNTLASAHPKKRAGRRIFKETRHPVYRGVRRRNNNKWVCEVRVPNDKSTRIWLGTYPTPEMAARAHDVAALSLRGKSACLNFADSAWRLPLPASTNAKEIRRVAAAAAVAIAAEDSRGKQLRTNAIDAVADCEVSSSDIGVDENCNNNKASQRFCDLDEITMPDAPVFEDMHEWLQTMAAEPLRSPTFVTYVNVRDVWNFVEDDAEVSLWSFTV* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1112 255 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 255 IPR045277 GO:0003700
Gso17g1112 255 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1 255 - -
Gso17g1112 255 SMART rav1_2 66 130 IPR001471 GO:0003700|GO:0006355
Gso17g1112 255 MobiDBLite consensus disorder prediction 1 38 - -
Gso17g1112 255 CDD AP2 67 126 IPR001471 GO:0003700|GO:0006355
Gso17g1112 255 Pfam AP2 domain 65 116 IPR001471 GO:0003700|GO:0006355
Gso17g1112 255 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Gso17g1112 255 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700|GO:0006355
Gso17g1112 255 Gene3D AP2/ERF domain 66 125 IPR036955 GO:0003700|GO:0006355
Gso17g1112 255 ProSiteProfiles AP2/ERF domain profile. 66 124 IPR001471 GO:0003700|GO:0006355
Gso17g1112 255 SUPERFAMILY DNA-binding domain 66 126 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1112 Gso-Chr17 10610670 10611742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1112 45 253 AP2-EREBP Transcription Factor Family AT4G25470 45.872 1.03e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gso17g1112 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1112 - - gmx:100779318 514.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0418 5 4410953 4411996 Gso17g1112 17 10610670 10611742 GST