Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1111 ATGGCATCATCATCATCATCGAAGAGGCATCCATTGTACCATGGAATCCGTTGCCGCGGAGGAAAATGGGTTACTGAAATCCGCGAACCGCGAAAAACAAACCGCATATGGCTGGGGACGTTCCTGACGCCGGAGATGGCGGCCGCCGCCTACGATGTGGCGGCGTTGGCCCTGAAAGGCAACGAGGCAGTTCTTAACTTCCCTGACTCGGTTGGCAGGTATCCGGTGCCGGCATCCAATTCCCCTTCGGACATCCGCTTCGCTGCCATTGCTGCAGCAGAACTCATGAAGCCTGAAGCCAACAACAACAACAACGTTAATGCATCAACAACAAATAATGCAGCAGTTCAATCTGATAGCAATGATGTTTTACCTTCGTTTGAAACTGAGTTTATGGACGAGGAAGCCATATTCTCCATGCCAAGTTTGCTGGTTGACATGGCTGGGGGAATGTTGCTATCTCCTCCCAGAATGAGCCCTCCCTCCGATAACGAAAGTAATTATGTTGGAGAAACTTTGTGGAACTTTTGA 531 0.5009 MASSSSSKRHPLYHGIRCRGGKWVTEIREPRKTNRIWLGTFLTPEMAAAAYDVAALALKGNEAVLNFPDSVGRYPVPASNSPSDIRFAAIAAAELMKPEANNNNNVNASTTNNAAVQSDSNDVLPSFETEFMDEEAIFSMPSLLVDMAGGMLLSPPRMSPPSDNESNYVGETLWNF* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1111 176 CDD AP2 11 70 IPR001471 GO:0003700|GO:0006355
Gso17g1111 176 Pfam AP2 domain 13 60 IPR001471 GO:0003700|GO:0006355
Gso17g1111 176 ProSiteProfiles AP2/ERF domain profile. 12 68 IPR001471 GO:0003700|GO:0006355
Gso17g1111 176 SMART rav1_2 12 74 IPR001471 GO:0003700|GO:0006355
Gso17g1111 176 SUPERFAMILY DNA-binding domain 12 70 IPR016177 GO:0003677
Gso17g1111 176 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 176 - -
Gso17g1111 176 Gene3D AP2/ERF domain 12 69 IPR036955 GO:0003700|GO:0006355
Gso17g1111 176 PANTHER ETHYLENE RESPONSE FACTOR 1 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1111 Gso-Chr17 10600039 10601379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1111 7 176 AP2-EREBP Transcription Factor Family AT5G52020 51.397 5.52e-45 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso17g1111 AP2 1.7e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1111 - - gmx:100778793 327.405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0417 5 4403828 4405000 Gso17g1111 17 10600039 10601379 GST