Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1101 ATGACGTTATCGTCATCATCAAGCAACGCCTACGACGTGCCATGGGTAGAGAAGTACCGTCCCAGCAAGGTCGCCGACATTGTCGGCAACGAGGACGCCGTCTCCAGGCTCCAAGTCATCGCTCGCGACGGCAACATGCCCAATCTCATTTTATCCGGTCCTCCCGGAACCGGAAAAACCACTAGCATACTCGCCCTCGCGCACGAGCTCCTCGGAGGACCAAATTGCAAGGAAGCTGTTCTCGAACTAAACGCCTCGGATGATAGAGGAATTGATGTTGTGAGGAACAAGATTAAGATGTTTGCTCAGAAGAAAGTGACGCTGACCCCGGGGAGGCACAAGATAGTGATACTGGATGAAGCTGATAGCATGACCACAGGGGCACAACAAGCATTGAGAAGGACTATGGAGATATATTCAAACACCACTCGATTTGCTCTTGCTTGCAATACCTCGGCCAAGATTATTGAGCCCATTCAGAGTAGATGCGCCATTGTGCGATTTTCACGATTGTCTGATCAAGAGATACTTGGTCGCCTCATGGTTGTGGTTCAAGCTGAGAAGGTTCCCTATGTTCCTGAAGGACTTGAAGCCATCATCTTCACTGCTGACGGTGATATGAGACAGGCGTTGAATAACTTGCAAGCAACATACAGTGGGTTCCAATTTGTTAACCAAGCAAATGTTTTCAAGGTTTGTGACCAGCCACATCCATTGCATGTGAAGAATATGGTGTGTAATGTGATTGAAGGGAATTTTGATGAAGCTTGTTCAGGCCTCAAGCAACTGTATGACTTGGGATATTCCCCCACAGATATCATCACGACACTTTTTCGTATAATAAAAAATTATGATATGGCTGAGTACCTGAAATTGGAATTCATGAAGGAAACTGGGTTTGCTCATATGAGAATTTGTGATGGAGTTGGTTCTTATCTTCAGTTGTGTGGTCTATTAGCTAAGCTTTCTCTTGTTCGTGAGACAGCTAAAGCTGTATGA 999 0.4595 MTLSSSSSNAYDVPWVEKYRPSKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGGPNCKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLTPGRHKIVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSAKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLHVKNMVCNVIEGNFDEACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSLVRETAKAV* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1101 332 CDD AAA 28 166 - -
Gso17g1101 332 Gene3D - 236 328 - -
Gso17g1101 332 PANTHER REPLICATION FACTOR C SUBUNIT 2 6 330 - -
Gso17g1101 332 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 233 IPR027417 -
Gso17g1101 332 Pfam Replication factor C C-terminal domain 236 321 IPR013748 -
Gso17g1101 332 Pfam ATPase family associated with various cellular activities (AAA) 49 168 IPR003959 GO:0005524|GO:0016887
Gso17g1101 332 Gene3D - 6 171 IPR027417 -
Gso17g1101 332 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 6 330 - -
Gso17g1101 332 CDD HLD_clamp_RFC 171 233 - -
Gso17g1101 332 SUPERFAMILY post-AAA+ oligomerization domain-like 235 326 IPR008921 GO:0003677|GO:0006260
Gso17g1101 332 Gene3D - 172 235 - -
Gso17g1101 332 SMART AAA_5 45 172 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1101 Gso-Chr17 10493248 10496352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1101 9 331 Core DNA Replication Machinery Family AT1G63160 91.331 0.0 614
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1101 K10755 - gmx:100775926 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0408 5 4298804 4302290 Gso17g1101 17 10493248 10496352 GST