Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1100 ATGGCCACGACGACAACAAGGTCCCCGAACCGTTCCTCCGAGGATGCCGCCGCCGATCCCACGCCGTTCCTCGCCACTTCCTCCGACGAATCCACCTCCGGCCGCCTCCTCCTCCGCCGCCCCAGCCTCCGCGAGGCCGCGCGCTTCCTGCGCCAGGCCAGCGGCCGCCGCCTCATGCGTGAGCCGTCCATGGTGGTGCGGGAGGCGGCGGCGGAGCAACTCGAGGAGAGGCAGAGCGATTGGGCCTATTCCAAGCCCGTCGTCGTCTTGGACATTCTCTGGAACTGCGCCTTCGTCGCCGCCGCCGCCACCGTCTTGGTTCTCAGCCGCAACGAGAATCCCAACATGCCTCTCAGGCTGTGGATTGTAGGCTACGCTCTGCAGTCCGTTCTCCACGTCGCGTGCGTCTGCGTCGAGTACCGGCGCCGCCTGCGCCACCGCGAACACTCCAACGCGGCCGCCGTCTCGGGTGGCGGCAGCGGGGATTTGAGTTCGCCTTCGATGGACGGCTCTGGACACTACGTGTCGTTCGACGACGATGGGATAAGTATGGCAAAGCATTTGGAATCAGCCAACACAATGTTTTCGTTTATTTGGTGGGTTGTTGGATTCTATTGGGTATCAGCTGATAGTGAAGCTTTGGTCCAAGATTCTCCTCTGCTTTACTGGTTATGTATAGCCTTCCTGGGTTTTGATGTTTTCTTTGTCGTTTTCTGTATTGCACTAGCATGCATCATTGGTATTGCTGTTTGCTGTTGTCTTCCATGTATCATTGCACTCCTGTATGCAGTTGCAGACCAGGAAGGGGCATCAAAAGAAGACATTGAGCAGTTGTCAAAATTCAAGTTCCAAAGAACTGAAACTAATGAGAAACATGCTGGGAATACACAAGGAGCTGCTGGAGGAATAATGATTGAATGCGATGCTGATTCTCCCATTGAACATGTTCTTTCTGACGAGGATGCGGAATGTTGCATCTGCCTTTCTGCTTATGATGATGGGGTTGAACTTAGAAAACTTCCTTGTAGCCACCATTTTCACTGTGCCTGTGTGGACAAATGGCTGCATATCAATGCTACTTGCCCCCTCTGCAAGTACAACATCTTGAAAAGTACCAGTCATGGTCAAGACGAAGTGTAG 1140 0.543 MATTTTRSPNRSSEDAAADPTPFLATSSDESTSGRLLLRRPSLREAARFLRQASGRRLMREPSMVVREAAAEQLEERQSDWAYSKPVVVLDILWNCAFVAAAATVLVLSRNENPNMPLRLWIVGYALQSVLHVACVCVEYRRRLRHREHSNAAAVSGGGSGDLSSPSMDGSGHYVSFDDDGISMAKHLESANTMFSFIWWVVGFYWVSADSEALVQDSPLLYWLCIAFLGFDVFFVVFCIALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFQRTETNEKHAGNTQGAAGGIMIECDADSPIEHVLSDEDAECCICLSAYDDGVELRKLPCSHHFHCACVDKWLHINATCPLCKYNILKSTSHGQDEV* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1100 379 MobiDBLite consensus disorder prediction 1 35 - -
Gso17g1100 379 CDD RING-H2_RNF111_like 323 367 - -
Gso17g1100 379 Pfam Ring finger domain 323 365 IPR001841 -
Gso17g1100 379 SMART ring_2 324 364 IPR001841 -
Gso17g1100 379 MobiDBLite consensus disorder prediction 1 15 - -
Gso17g1100 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 372 IPR013083 -
Gso17g1100 379 PANTHER TARGET OF ERK KINASE MPK-1 1 379 - -
Gso17g1100 379 SUPERFAMILY RING/U-box 315 372 - -
Gso17g1100 379 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 379 - -
Gso17g1100 379 ProSiteProfiles Zinc finger RING-type profile. 324 365 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1100 Gso-Chr17 10485226 10490528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1100 25 374 C3H Transcription Factor Family AT1G68070 49.438 1.55e-116 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1100 - - gmx:100776124 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0407 5 4288443 4293088 Gso17g1100 17 10485226 10490528 GST
Gso17g1100 17 10485226 10490528 Gso11g0224 11 1850233 1855702 PCT