Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1091 ATGGTTTCGACGAGACGCAGTGGATCTCTCTCTGCCAAAAGATCTTCCTCCTCGGAAGATAAATCTCCTTCGCCGAAGCGCCAAAAGGTCGACAATGGCGGTTCGTCGGAGAAATCGGTGCCGACGCCGGCGGAGAATTCCAAGGATTTATCTTCCCCGGAGCCCGTGCCTGATCCCGGAGAATGTGGCTCCGGCGACGCTCAGATCGCCGGAGCCGGTGCCGCCGATGGAGTGAGCTCTGGCAAGGGTGACGCTACGCCGGCTGTGCCTGTCACGGCACCGATTGCTGATGCCGCATGTCCGTCGTTCTCTTCGTGGATTAATTATCAGAAACAGAATCCGAATATCGAAGGTGCGCCGTGGTGCAGGTTCTTGTCGCAGTCTGCACAGAATCCTAATGTTGCTGTTTGCACACCCATTTTCACGATTGGTTCTAATAGAAGTTGCAACTTTCCACTGAATGATCAAACTATAAGTGGAAATTTATGCAAGATCAAACATACGCAGGGTGACGGAAGTGCTGTAGCTGTGCTAGAAAGTATGGGTAGCAAAGGATCTGTTCTAGTAAATGGGACACATGTCAAGAAGAATACCAGCTGTGTACTTAACTCGGGTGATGAAGTGGTTTTTGGTGTGCTTGGAAATCATTCTTATATTTTCCAGCAACTAAATACTGAGGTTGCAGTTAGGGGTGCAGAAGTTCAAAGTGGTATTGGGAAATTTCTGCCGCTTGAAAGGAGAAGCGGAGACCCTTCAGCTGTGGATGGGGCCTCTATTTTGGCTTCTCTTTCCAACAGACAGGACCTTACAAGATGGAAATCTCCATCTCAGACCTCCAGTAAACCTCACCAGGGCACCGATGTCTCTAGTCGTTCTGTTCATCATGATTGTACAGAAACTGAGCTTGATGGCTCAGAATCAACTCCAAATGTGCGGAGTGATAAAGCAGCAGAGGTTCGAACAAGTGACAAGAATTCAACAATGGATTGCAATCCAGATGCTGGTGCAGAGGCAGGCAATGTAAAAATCTCTGGGGTGAATGATTTCCTAAGGCCTTTCTTCAGGATCTTAGCTCAACCTAGTTGTAAACTGAAATTGAGCAGAAGTATCTGTAAGCAGGTGTTGGAAGAAAGAAATGGGACGCTGGATATGCAGGCTGCATCGACTTTGGGTACATCTGTGCGCTGTGCAGTGTTTAAAGCAGATGTTCATGCTGCAATACTGGATGGAAAAGAAATAGATGCTTCTTTTGACAACTTTCCTTACTATTTAAGTGAGAATACAAAAAATGTCCTGGTGGCTGCTTGCTTTATGCACCTCAGGCATAAAGAACATGAAAAGTTTACTGCAGATCTTACAACCATAAACCCTCGTATTCTTCTCTCTGGACCTGCAGGGTCTGAAATATATCAGGAGATGTTGGTAAAAGCACTTGCAAAATACTTTGGAGCTAAGTTGCTCATATTTGATAGTCATTTGCTTTTGGGTGGTTTATCTTCCAAGGAAGCTGAGCTACTCAAAGATGGACTTAATGCTGAGAAATCCTTCGGCTGCACTAAACTAAGTCCTACAGAAGACATGGCCAGGATCATGGACCCATTAGCTAGCGAAATAGAGACACCTAGCCCTTCAAATGCACCTACATCATATGGCTTTGAGTCTCAACCTAAGTTGGAAACTGATAACATGCCATCCACCTCTGGGACAGCTAAAAGTTGCTCATTCAAATTAGGTGATAGGGTGAAATTTAGCTGTTCATCTTCTTGTGGCGTATATCAGACATCTCCAAGGGGACCGTCTAATGGAAGTCGGGGGAAGGTTGTCTTACTATTTGATGATAATCCCTTGTCTAAAATTGGTGTGAGATTTGATAAACCCATACCTGATGGAGTTGATCTTGGTGGTGCCTGTGAGGGAGGTCAAGGATTTTTCTGCAATGTCACCGATCTTCGTTTGGAAAGCAGTGCTGTAGAAGAACTGGACAAATTACTTATTCATTCATTGTTTGAGGTTGTTTTTAGTGAGAGTAGAAGTGCACCATTCATTTTGTTCATGAAAGATGCTGAGAAGTCTATTGTAGGAAATGGAGATTCACATTCATTTAAAAGTAAGCTTGAAAATCTTCCAGACAATGTGGTTGTAATAGGTTCACACACACAAAATGACAGTCGCAAGGAAAAGTCACATCCTGGTGGTTTGCTTTTTACAAAATTTGGTAGCAATCAGACTGCCCTTCTCGACTTGGCTTTCCCAGATAGTTTTGGACGATTGCATGACAGGGGGAAGGAAGCCCCAAAACAAAATAGAACTTTGACTAAGCTTTTCCCAAATAAAATTACAATTCACATGCCACAGGATGAGGCTCTTCTAGCATCCTGGAAGCAGCAACTGGATCGAGATGTTGAGACTCTCAAAATTAAAGGAAATTTACATCACTTGCGCACAGTTCTGGGACGTTGCGGAATGGAATGTGAAGGACTTGAGACCTTGTGCATTAAGGATCAGACACTTACAAATGAAAATGCAGAGAAGATAATTGGTTGGGCTTTAAGCCACCACCTCATGCAGAATTCAGAAGCTAAGCCTGATTCAAAGCTTGTATTGTCCTGTGAGAGCATTCTGTATGGAATTGGGATCTTGCAGTCTATCCAGAATGAATCCAAGAGCCTGAAGAAATCACTTAAGGATGTTGTGACAGAAAATGAATTTGAAAAGAGGCTTTTGGCTGATGTTATTCCACCTAGTGACATTGATGTTACTTTTGATGATATTGGAGCTCTTGAAAAGGTCAAGGATACATTGAAGGAGTTGGTGATGCTTCCTTTACAGAGGCCTGAGCTTTTTTGCAAGGGACAATTAACCAAGCCCTGCAAAGGTATCCTATTATTTGGTCCCCCTGGAACTGGTAAAACAATGCTTGCAAAGGCAATTGCTACTGAAGCTGGTGCTAACTTCATCAACATTTCTATGTCAAGTATCACATCTAAGTGGTTTGGTGAGGGTGAGAAATATGTGAAAGCTGTTTTCTCTCTGGCGAGTAAAATTTCACCTAGTGTTATATTTGTTGATGAGGTTGACAGCATGTTGGGTCGGAGGGAAAACCCAGGAGAGCATGAGGCCATGCGAAAGATGAAAAATGAATTCATGGTGAATTGGGATGGGTTACGCACGAAGGAAACCGAGAGAGTTCTTGTCCTGGCTGCCACTAACAGGCCTTTTGACCTTGACGAGGCTGTCATAAGGAGGATGCCAAGAAGATTGATGGTAAATTTGCCAGATGCCCCTAATCGAGCAAAAATATTGAAAGTTATACTGGCAAAAGAGGAATTGTCTCCTGATGTTGATTTAGATGCAGTTGCAAGTATGACCGATGGATATTCCGGAAGTGATCTTAAGAATTTGTGTGTAACTGCAGCACATCGGCCTATTAAAGAGATATTAGAAAAGGAAAAAAAGGAACGTGCTGCTGCTCTTGCAGAAGGCCAACCAGCTCCAGCATTATGCAGCAGTGGGGACGTCAGATCTTTAAACATGGAAGACTTTAAATATGCTCATCAGCAGGTATGTGCAAGTGTTTCTTCTGAGTCAGTAAATATGACTGAGCTTTTGCAATGGAATGAATTATATGGAGAAGGGGGTTCAAGAGTAAAGAAAGCACTCAGTTATTTCATGTGA 3675 0.4351 MVSTRRSGSLSAKRSSSSEDKSPSPKRQKVDNGGSSEKSVPTPAENSKDLSSPEPVPDPGECGSGDAQIAGAGAADGVSSGKGDATPAVPVTAPIADAACPSFSSWINYQKQNPNIEGAPWCRFLSQSAQNPNVAVCTPIFTIGSNRSCNFPLNDQTISGNLCKIKHTQGDGSAVAVLESMGSKGSVLVNGTHVKKNTSCVLNSGDEVVFGVLGNHSYIFQQLNTEVAVRGAEVQSGIGKFLPLERRSGDPSAVDGASILASLSNRQDLTRWKSPSQTSSKPHQGTDVSSRSVHHDCTETELDGSESTPNVRSDKAAEVRTSDKNSTMDCNPDAGAEAGNVKISGVNDFLRPFFRILAQPSCKLKLSRSICKQVLEERNGTLDMQAASTLGTSVRCAVFKADVHAAILDGKEIDASFDNFPYYLSENTKNVLVAACFMHLRHKEHEKFTADLTTINPRILLSGPAGSEIYQEMLVKALAKYFGAKLLIFDSHLLLGGLSSKEAELLKDGLNAEKSFGCTKLSPTEDMARIMDPLASEIETPSPSNAPTSYGFESQPKLETDNMPSTSGTAKSCSFKLGDRVKFSCSSSCGVYQTSPRGPSNGSRGKVVLLFDDNPLSKIGVRFDKPIPDGVDLGGACEGGQGFFCNVTDLRLESSAVEELDKLLIHSLFEVVFSESRSAPFILFMKDAEKSIVGNGDSHSFKSKLENLPDNVVVIGSHTQNDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEAPKQNRTLTKLFPNKITIHMPQDEALLASWKQQLDRDVETLKIKGNLHHLRTVLGRCGMECEGLETLCIKDQTLTNENAEKIIGWALSHHLMQNSEAKPDSKLVLSCESILYGIGILQSIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIDVTFDDIGALEKVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAIATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKISPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKETERVLVLAATNRPFDLDEAVIRRMPRRLMVNLPDAPNRAKILKVILAKEELSPDVDLDAVASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAALAEGQPAPALCSSGDVRSLNMEDFKYAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM* 1225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1091 1224 MobiDBLite consensus disorder prediction 34 49 - -
Gso17g1091 1224 SUPERFAMILY SMAD/FHA domain 108 221 IPR008984 GO:0005515
Gso17g1091 1224 MobiDBLite consensus disorder prediction 1 18 - -
Gso17g1091 1224 SMART AAA_5 956 1093 IPR003593 -
Gso17g1091 1224 MobiDBLite consensus disorder prediction 288 302 - -
Gso17g1091 1224 Pfam FHA domain 142 211 IPR000253 GO:0005515
Gso17g1091 1224 Pfam AAA+ lid domain 1113 1148 IPR041569 -
Gso17g1091 1224 Coils Coil 880 900 - -
Gso17g1091 1224 MobiDBLite consensus disorder prediction 1 85 - -
Gso17g1091 1224 CDD AAA 958 1091 - -
Gso17g1091 1224 ProSitePatterns AAA-protein family signature. 1063 1082 IPR003960 GO:0005524|GO:0016887
Gso17g1091 1224 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 76 1224 - -
Gso17g1091 1224 MobiDBLite consensus disorder prediction 537 569 - -
Gso17g1091 1224 MobiDBLite consensus disorder prediction 268 333 - -
Gso17g1091 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 918 1199 IPR027417 -
Gso17g1091 1224 Gene3D - 918 1199 IPR027417 -
Gso17g1091 1224 MobiDBLite consensus disorder prediction 538 569 - -
Gso17g1091 1224 Gene3D - 120 229 - -
Gso17g1091 1224 Pfam ATPase family associated with various cellular activities (AAA) 960 1089 IPR003959 GO:0005524|GO:0016887
Gso17g1091 1224 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 76 1224 - -
Gso17g1091 1224 MobiDBLite consensus disorder prediction 19 33 - -
Gso17g1091 1224 MobiDBLite consensus disorder prediction 268 287 - -
Gso17g1091 1224 Gene3D - 1092 1186 - -
Gso17g1091 1224 CDD FHA 141 221 IPR000253 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1091 Gso-Chr17 10372521 10384899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1091 919 1167 Calmodulin-binding Proteins AT3G56690 39.453 2.56e-41 163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0394 5 4158253 4176266 Gso17g1091 17 10372521 10384899 GST
Gso17g1091 17 10372521 10384899 Gso4g1646 4 46256053 46278652 PCT
Gso17g1091 17 10372521 10384899 Gso6g1444 6 14374802 14394693 PCT
Gso4g1646 4 46256053 46278652 Gso17g1091 17 10372521 10384899 PCT
Gso6g1444 6 14374802 14394693 Gso17g1091 17 10372521 10384899 PCT