Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1089 ATGGATATGGTTATAGAGGTTCTCTCCGGTGCGCACTTCTCCGGTTGGCATCCTTCTACGACGTCGTCTTGTTCTTCTCCAACATCCTCACATCATCCATTCGTCATCGGTGTCTCTGGAGGCACGGCATCGGGAAAAACCACAGTGTGTGATTTGATCATTCAGCAGCTGCAAGATCACAGAGTTGTGCTCGTTAGTCAGGATTCATTTTACCGCGGTTTGACGAATGACGAGTTGAAACGCGTTCATGAGTATAATTTTGATCATCCTAATGCATTTGATACAGAGCAACTCGTAGAAACTCTCAGTAAGCTCAAATCTGGACAGTCAGTTCAGGTTCCGTTTTACGATTTTAAGCTTCACCAGAGATCTTCTGAGAGATCCAGACAGGTCAATGCATCTGAAGTAATTATTCTGGAGGGAATATTGGTTTTTCATGAACAACGTGTCCGCAACATGATGAATATGAAGATATTTGTTGATGCAGATCCAGATGTAAGGCTTGCCCGCAGAATAAGACGGGATACTGTTGAGAGGGGTAGAGATGTTCACTCTGTACTGGAACAGTATGCAAAATTTGTTAAGCCTGCCTTCGATGATTTTATTCTTCCATCCAAAAAATATGCTGACATCATCATACCTCGCGGTGGAGACAATCTTGTAGCAATTGACTTGATTGTTCAACATATCCGCACTAAGCTTGGCCAACATAACCTCTGCAAGATATATCCAAATGTGAATGTTATACAGTCTACTTTCCAGACTAGAGGCATGCACACTCTTATTCGTGACAGGGACTTATCAAAGCATGATTTTGTTTTTTATTCAGATCGGCTAATTCGTGTGGTAGTGGAACATGGTCTTGGTTACTTGCCATTTACAGAGAAACAAGTTATCACACCTACAGGCTCAATTTATACTGGAGTTGATTTTTGTAAGAAATTATGTGGAGTATCCATTATTCGAAGTGGTGAAAGCATGGAAAATGCTTTGCGTGCTTGCTGTAAAGGAATAAAGATAGGAAAAATTCTAATTCACCGTGAAGGTGGTGATGAAACCCAGCTTATTTATGAGAAACTTCCTAAAGATATTTCGGAGAGACATGTTCTTCTCATGGACCCAGTACTTGGAACAGGTAAAACTGCTAGCCAAGCAATCGAGCTTCTTATAAAGAAGGGAGTTCCAGAGTCCCGGATAATATTTCTTAACCTCATTTCTGCTCCTGAGGGAATACATTGTGTATGTAAACATTTTCCGCATCTGAAAATTGTCACATCGGAGATTGAAGAAGGATTAAATGACCAGTTCCGTGTCATACCAGGGTTAGGAGAATTTGGTGATCGCTACTTTGGTACCGACGATTCTTAG 1368 0.4123 MDMVIEVLSGAHFSGWHPSTTSSCSSPTSSHHPFVIGVSGGTASGKTTVCDLIIQQLQDHRVVLVSQDSFYRGLTNDELKRVHEYNFDHPNAFDTEQLVETLSKLKSGQSVQVPFYDFKLHQRSSERSRQVNASEVIILEGILVFHEQRVRNMMNMKIFVDADPDVRLARRIRRDTVERGRDVHSVLEQYAKFVKPAFDDFILPSKKYADIIIPRGGDNLVAIDLIVQHIRTKLGQHNLCKIYPNVNVIQSTFQTRGMHTLIRDRDLSKHDFVFYSDRLIRVVVEHGLGYLPFTEKQVITPTGSIYTGVDFCKKLCGVSIIRSGESMENALRACCKGIKIGKILIHREGGDETQLIYEKLPKDISERHVLLMDPVLGTGKTASQAIELLIKKGVPESRIIFLNLISAPEGIHCVCKHFPHLKIVTSEIEEGLNDQFRVIPGLGEFGDRYFGTDDS* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1089 455 CDD UMPK 35 233 IPR000764 -
Gso17g1089 455 PANTHER URIDINE KINASE 12 451 - -
Gso17g1089 455 PRINTS Uridine kinase signature 33 50 - -
Gso17g1089 455 PRINTS Uridine kinase signature 63 74 - -
Gso17g1089 455 PRINTS Uridine kinase signature 108 123 - -
Gso17g1089 455 PRINTS Uridine kinase signature 165 175 - -
Gso17g1089 455 PRINTS Uridine kinase signature 179 190 - -
Gso17g1089 455 PRINTS Uridine kinase signature 201 214 - -
Gso17g1089 455 TIGRFAM udk: uridine kinase 33 233 IPR000764 -
Gso17g1089 455 Gene3D - 237 452 IPR029057 -
Gso17g1089 455 PANTHER URIDINE KINASE 12 451 - -
Gso17g1089 455 CDD PRTases_typeI 310 412 IPR000836 -
Gso17g1089 455 Gene3D - 29 236 IPR027417 -
Gso17g1089 455 ProSiteProfiles UvrC family, homology region profile. 121 217 IPR001162 GO:0009381
Gso17g1089 455 SUPERFAMILY PRTase-like 248 451 IPR029057 -
Gso17g1089 455 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 226 IPR027417 -
Gso17g1089 455 Pfam Phosphoribulokinase / Uridine kinase family 35 221 IPR006083 GO:0005524|GO:0016301
Gso17g1089 455 Pfam Uracil phosphoribosyltransferase 251 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1089 Gso-Chr17 10356759 10362822 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1089 1 454 PRT Gene Family AT5G40870 76.681 0.0 743
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1089 K00876 - gmx:100816209 899.042