Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1084 ATGGCCACTTGCACTTCTCTGTCTCTTTGTCCTCACACTTTCTGTTGCCGCCACCGCCCTCACCCTACTCGCCGTTCCCTTGCGTCGTGCTCTCTCTCCCCTTCTTCCCTCCCAGATATGGATGGACCTAAAGTACTGCGTAAAAGATCTAGAAGAATAGAAGGTCCTAGAAAAAGCATGGAAGACTCTGTTCAATGCAAGATGGAAGAATTCTACGAAGGACAGGATGGGCCACCCCTCAGAGTTCTTCCCATTGGTGGGTTGGGTGAAATTGGGATGAATTGTATGCTTGTTGGCAACTATGATCGCTATATCCTCATTGATGCTGGTATCATGTTTCCAGACTATGACGAGCTTGGAGTCCAAAAGATCATACCTGATACAACATTTATAAGAAAATGGAAGCACAAAATTGAAGCAGTTATTATAACACATGGTCATGAAGATCATATTGGTGCATTGCCTTGGGTCATTCCAGCATTAGATTCTCATACACCAATTTTTGCATCATCCTTTACAATGGAGCTTATAAGGAAACGTTTGAAGGATCATGGTATTTTTGTTCCATCCCGACTCAAAGTATTTAGAACGAGGAAGAAGTTTATGGCTGGGCCATTTGAGGTAGAGCCTATCACAGTGACTCATTCTATTCCTGATTGCTGTGGACTAGTGCTCCGTTGTTCTGATGGTACCATTCTTCACACTGGGGATTGGAAGATTGATGAAACGCCATTAGATGGTAAAGTTTTTGATCGTGAAGCTCTAGAGGAACTCTCAAAAGAAGGAGTCACATTGATGATGAGTGATTCGACAAATGTACTCTCACCTGGAAGGACAACCAGTGAATCTGTTGTGGCAGATGCATTATTAAGGAATATTTCAGCTGCTAAAGGAAGGGTTATAACGACCCAGTTTGCATCCAATATACATCGTCTTGGAAGTGTGAAAGCTGCTGCTGATTTAACTGGTAGAAAGTTGGTATTTGTTGGCATGTCGTTAAGAACATATTTAGATGCAGCTTGGAAGGATGGAAAGTCTCCAATTGATCCATCTACTCTGGTGAAAGCGGAAGATATTGATGCTTATGCGCCAAAGGATTTGCTTATTGTGACAACGGGATCTCAAGCAGAGCCACGTGCTGCCTTAAATCTAGCATCTTTTGGAAGTAGTCATTCTTTCAAGCTGACAAAGGAAGATACTGTTTTGTATTCAGCTAAGGTTATACCTGGTAACGAGTCTCGTGTTATGGAAATGCTAAACCGCATATCAGAGATTGGATCAACTATAGTTATGGGGAAGAATGAATGTCTGCACACATCTGGTCATGGGTATCGTGGAGAATTAGAGGAAGTACTTAGAATTGTGAAGCCACAGCATTTTCTACCCATACATGGAGAACTCTTGTTCTTGAAGGAGCATGAATTACTTGGAAAATCAACTGGCATTCGGCACACAACTGTTATTAAGAATGGAGAGATGCTTGGAGTTTCTCATTTGAGAAATAGAAGAGTCCTTTCTAATGGTTTTATTTCACTTGGAAAAGAGAATTTGCAGTTGATGTATAGTGATGGCGAGAAAGCGTTTGGTACATCAAGTGACCTCTTTATTGATGAAAGATTGAAAATTGCATTGGATGGCATCATAGTGGTTAACATGGAAATATTTCGCCCTCAAAATTTAGACAGTCCAGTTGAGAACACCTTAAAAGGAAAAATAAGAATTACCACCAGATGCCTGTGGCTTGACAAGGGGAAGCTGTTGGATGCTCTCCATAAAGCTGCTCATGCTGCTCTTGCAAGCTGCCCTGTAAGCTGTCCACTGGCTCATATGGAAAAAATTGTGTCTGAGATGTTGAGAAAAATGGTGAGGAAGTACAGTGGCAAACGGCCTGAAGTTATTGCCATTGCCATAGAAAATCCTGCAGCTGTTCTTGCTAATGAGATAAACACAAAGTTGTCTGGAAAATTAAATGTGGATGGGATGTCGGCATTGAGAAAAGTGGTGGATGGACATGAGAAAGAGAATCAGAGAACCGAAATGCAAATAAGAGATCGTATTGATGTAGGTGGTCTACTACCTACAAAAGACAATGCTATCTCAAGTGGAGCTGAGGATGGCTTGTCTGATGCGGAGGATCCAAATGATTATTTTAAACCATTTGTTGAATCCTCTCCAGTTGAGAAGTCAATTAAAACTAACAATGGTTATGTTCCACGAAAGGAGAAGTCATCCCCATTGAAGGATGACTGTTCTGAAGACACTGAAGAATGCAATTCTGTAAATACATCAGATTCTGAACCCAAATCTTCAAAATCAGCAAAGAGAAATAAATGGAAACATGAAGAAGTTAAGAAGCTGATTGATATGCGTGGGGAACTGAATGACAGATTTCAAGTTGTGAAGGGAAGGATGGCCCTCTGGGAAGAAATATCTCAGAATTTGTTGGCTAATGGGATCAGCAGAAGTCCTGGGCAGTGTAAATCTCTGTGGACTTCTTTGTTACAGAAATATGAGGAGGTGAAGAATGAAAAGAAGAACAAGAAAAAATGGCCGTATTTTGAGGACATGGAAAGGATTCTAGCTGATAACAAGACACTAGAAACAAAATGA 2610 0.4103 MATCTSLSLCPHTFCCRHRPHPTRRSLASCSLSPSSLPDMDGPKVLRKRSRRIEGPRKSMEDSVQCKMEEFYEGQDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGIMFPDYDELGVQKIIPDTTFIRKWKHKIEAVIITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIRKRLKDHGIFVPSRLKVFRTRKKFMAGPFEVEPITVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTTSESVVADALLRNISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLDAAWKDGKSPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASFGSSHSFKLTKEDTVLYSAKVIPGNESRVMEMLNRISEIGSTIVMGKNECLHTSGHGYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTTVIKNGEMLGVSHLRNRRVLSNGFISLGKENLQLMYSDGEKAFGTSSDLFIDERLKIALDGIIVVNMEIFRPQNLDSPVENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALASCPVSCPLAHMEKIVSEMLRKMVRKYSGKRPEVIAIAIENPAAVLANEINTKLSGKLNVDGMSALRKVVDGHEKENQRTEMQIRDRIDVGGLLPTKDNAISSGAEDGLSDAEDPNDYFKPFVESSPVEKSIKTNNGYVPRKEKSSPLKDDCSEDTEECNSVNTSDSEPKSSKSAKRNKWKHEEVKKLIDMRGELNDRFQVVKGRMALWEEISQNLLANGISRSPGQCKSLWTSLLQKYEEVKNEKKNKKKWPYFEDMERILADNKTLETK* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1084 869 Pfam Beta-lactamase superfamily domain 103 239 IPR001279 -
Gso17g1084 869 Coils Coil 661 681 - -
Gso17g1084 869 Gene3D - 778 839 - -
Gso17g1084 869 PANTHER RIBONUCLEASE J 1 869 - -
Gso17g1084 869 Gene3D - 281 431 IPR042173 -
Gso17g1084 869 PANTHER RNA-METABOLISING METALLO-BETA-LACTAMASE 1 869 - -
Gso17g1084 869 SUPERFAMILY Metallo-hydrolase/oxidoreductase 80 494 IPR036866 -
Gso17g1084 869 MobiDBLite consensus disorder prediction 687 778 - -
Gso17g1084 869 ProSiteProfiles Myb-like domain profile. 770 834 IPR001005 -
Gso17g1084 869 CDD GT1 776 837 - -
Gso17g1084 869 CDD RNaseJ_MBL-fold 83 494 - -
Gso17g1084 869 Pfam Myb/SANT-like DNA-binding domain 775 859 IPR044822 -
Gso17g1084 869 SMART Lactamase_B_5a 92 289 IPR001279 -
Gso17g1084 869 Gene3D - 84 496 IPR036866 -
Gso17g1084 869 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 436 478 IPR011108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1084 Gso-Chr17 10296366 10305450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1084 777 861 Trihelix Transcription Factor Family AT2G38250 34.483 6.54e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gso17g1084 Lactamase_B_2 1.7e-10 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1084 - - gmx:100814619 1679.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g1084 17 10296366 10305450 Gso4g1643 4 46229776 46240153 PCT
Gso17g1084 17 10296366 10305450 Gso6g1447 6 14410588 14419861 PCT
Gso4g1643 4 46229776 46240153 Gso17g1084 17 10296366 10305450 PCT
Gso6g1447 6 14410588 14419861 Gso17g1084 17 10296366 10305450 PCT