Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1076 ATGGCAACCGGTTACCGATTGTTTCTCATCCCCGCGGCAAGGCCCCTTCTCCGCAAAAACTTCTTCTTCATTTCCTCCTCCTACTCTACTCGCGCGCTCCAACCGTGCCAGCCATCATCGTCTGCAGAGGAAAAGTCCCGAGACGTGAGGGTTTGGGCCTGGTGGGACTTCACAAAGTGCCACGTGCCCCACAATTTCGACGTTCTCAAAGTTGCCCCCACAATCATGGAGGCAATGAGAGCCAACGGCATCAGAGGCCCTCTCAACATCACCGCCTTCGGCGACGTTCTGCTCCTCTCCCGCGTCCACCAGGAAGCACTCGCCTACACCGGCGTTCGCTTCATCCACGTCAAAGATGGAAGGAGCAGCACCACCGACATTCTCGTTGACCTAATGTATTGGGTCTCGCAGAACCCTCCACCCGCGCATATACTCTTGATATCCGGCGACAGAGACTTCGCTGGCGTGTTGCATAGGTTGAGAACGAGTAACTACAATATCTTGCTCGCTACCCCAGAGAGCGCCCCTGGTGTTCTCCACAGTGCCGCCACGATAGCGTGGCATTGGTCTTCGATGCTTAAGGAAGGAAATCTTACTGGAAAATGTTTCAACCATCCACCCGATGGGCCGTATGGTTCTTGGTATGGAAGCTACAAGCCTGATTCTCTTGAAAAGCCGGCTCCAGTTGCGGCTCAGGAGGCTGCTGATGCCTCTTTGCCCAATGTGGAGGTCCACGAGCCTTCTTCTTTGGGTTCGGTTCCCAAGTCGGTTGTGAAGCAGGTTAGGCGTATATTAAGTTTGCATCCAAAAGGGATAGATATTGATGTTCTTCGCGCTGAGTTGGTGAAATGTGGTGAGCGTTTGGATAAAGGGATGTTTGGGCATAAAAGGTTTTCCCGCTTTCTGTTGTCGTTGCCACGTGTACAGCTTCGGCCCGGTGTTGAGGGTTTTCTTGCTGTACATTTGGTTCCTTCGGAATCCCCGGAACCTTGTGAGAGCAGTTCTGTGGCATCCACAATGTCTGGTGCGAAGAATAAGGAGAAAGGGTGTGCTGCGACTCCGAAGGTAAATGGTGAGGATAAAAGTAAGGTTAAGGGAGCTGATGAGAAATTCTCAATTGCCTCGATCCGTGAAAGGAGTTCGGATGACAAATCAAAGCCAGTCCAACCGAGTCCTTCACAAGGGAGATCCAATGAGGAGTATGTTGATGGTGAATCATCATCTCCTGTATTGGTTGAAAAACATGTTTGTCAGCCACCAAATGAGTTGCAGAAATCTTCTGTAGCTTGTGACAAGGTTGTGGATGTGGCTAATGCACAACACTCAGAGACTCAACTGCCACCCAAGGACAACAAAGATTCTGAAACGAAGATGGATTCCTTAAAAGTGACTTGTCAAAAATCATCTGTTGAAGACATTGTTAGGTGTGAGGATGCAGGTCATAAAAGTATGGAAAAGCATACAACTTCAGAGAATCACTCTGCTGGAAATGATCAATCAATGGTGGAAGACAATGTTATTGCAAATTATGAATCTGGAGATTTTGAAGCAAAGAAGAAATGTGAGGATCCGACTAGAATGGAGGTTGATGAAGTTGTTCACAGCCCATCTTCTTCACCAGTTGATGGCTCTCCAGTTGTCCAAACACCTGGTGCAAGTCCTAAAACTAATAACAGAACTCCAACATTCTTTAGCTGGATTAGAAGCTGGTGGCCATTTGGGAGAAGCAATGAAAAGTACGATGATTTGATCGCTCTTCAGAACAAGGCTGTGAGTCTTGTTGAGGGTTCCAAGTTATCTGAACTGGACCAGACTGTTAGTCAATCTGAAGAGCCCAAGTTATCAGAACTGGATCAGGATGTTAGTCATGCCGAGGATTCCAAGTTATCTGAGTTGGACCAGACTGTTAGTCAATTTGAAGAGCCCAAGTTAACAGTATTGGATCAGACTGTTAGTCATTCTGCAAAGCCTGAGTTATTTTCTAGTGCTTCCTTTTGGAATAATATGGAATCTTTCATTTTTGCACCCAAGGGATCACTTCTTTTCTCCCAGTCAAGAAGCAGGGAGGATGTGGTGCATAAATTACAAAATGGTGGACCCCTGGTTCTTAGATCACTCCCCAAAGAAGACATCCTTCAATTGGTGGAATTGTTAATAACAGAGAAAAAATGGTTGGAGGAAAACCCCTCCAAAACATTTCCTTTTAAGCTAATTCGACCTGTTCAGAAGAAATCATCGGTGAACCAATCCCATGATGTAAATGGTTTGAGATCTCTCTTTATAGGTAGAACATCACAGTCAAACTTGCAAAAATCATTAGAACATGATGTGGAGAAACACAATCAGAGTATTGCTCATTCTCAAGTTTCTGCACCAACTATGGAAACAAAATATACCGAGAGATCCAGAAATGATATATTAGAAGACTGTAAAAAACTTGTGAGTGAAATGCTGAGGGAACACCCAGAGGGGTATAATATTGGTTCTTTCCAAAGACTATTTGTTGATAGGTATGGCTATCATCTTGATATACAGAAGCTTGGTTATCAAAAGTTGGCAGCCTTGCTACAGATAATGCCTGGGGTCAAATTAGAGTCCACTTATATTTTTCCTTCTGTTCCTGCAGTCTGTGATTCAGACTTGGAAACTTCTATCCTCAAAACTCAAGCAACCACTGATATTCATGCAGCTTCCAACTCAGATAGTGAATCATCTGAGTCAGCCCCCAAAGATGATAACATGGAATCCCCATGGTGTGAGGTAGGTCCTGTTTCTATCAACAATTCCGACAAGAGTGGTTTAGAATTAAAGCCTAGTCAGAAAACTATAGAACTGGATACATCAAAATCAAAGCATCCTGATTATGAACCTGTCGTATCAGATGATGAGTTTTCTGCATCTGAAGGAGATGACTCTTGTTTAACTCAATCAGCACAGCAAAGAAAGCCAAAATGTAATGAACAAGACAGTTCTTTTTGGCAAGCTATGGATTTGTGGCACAGCAGCAAGGAAGAAGAGAATAGTGGCAAGAAATCAAACAATGTTGACAGCTTGGACATTTCTCTGGCTGAAATTTTAGATTCATCCACCAAGTCAACCAGGGACACCCTTTCCCAGATTCCTTCATCGAAATACAGAGAGAATAATGGCAAGAAGTCAGACAATGTTGACAGCTTGGACACTTCTCTGGCTGATATGTTTAATTCATCATCCACTGAATCAACTACGGGTACCCTTTCCAAAATTCCATCATCAAATTATAGAGAGAAGCAACGGTCTCATAAGAACTATTCCTTTGTTGCTGATCCAGTCTTACCTAACAAGGAGAAGCTGGTTGATGACCTCAAGAAAGCAGATGAGTCAAAGATGCAAAACTGA 3378 0.4435 MATGYRLFLIPAARPLLRKNFFFISSSYSTRALQPCQPSSSAEEKSRDVRVWAWWDFTKCHVPHNFDVLKVAPTIMEAMRANGIRGPLNITAFGDVLLLSRVHQEALAYTGVRFIHVKDGRSSTTDILVDLMYWVSQNPPPAHILLISGDRDFAGVLHRLRTSNYNILLATPESAPGVLHSAATIAWHWSSMLKEGNLTGKCFNHPPDGPYGSWYGSYKPDSLEKPAPVAAQEAADASLPNVEVHEPSSLGSVPKSVVKQVRRILSLHPKGIDIDVLRAELVKCGERLDKGMFGHKRFSRFLLSLPRVQLRPGVEGFLAVHLVPSESPEPCESSSVASTMSGAKNKEKGCAATPKVNGEDKSKVKGADEKFSIASIRERSSDDKSKPVQPSPSQGRSNEEYVDGESSSPVLVEKHVCQPPNELQKSSVACDKVVDVANAQHSETQLPPKDNKDSETKMDSLKVTCQKSSVEDIVRCEDAGHKSMEKHTTSENHSAGNDQSMVEDNVIANYESGDFEAKKKCEDPTRMEVDEVVHSPSSSPVDGSPVVQTPGASPKTNNRTPTFFSWIRSWWPFGRSNEKYDDLIALQNKAVSLVEGSKLSELDQTVSQSEEPKLSELDQDVSHAEDSKLSELDQTVSQFEEPKLTVLDQTVSHSAKPELFSSASFWNNMESFIFAPKGSLLFSQSRSREDVVHKLQNGGPLVLRSLPKEDILQLVELLITEKKWLEENPSKTFPFKLIRPVQKKSSVNQSHDVNGLRSLFIGRTSQSNLQKSLEHDVEKHNQSIAHSQVSAPTMETKYTERSRNDILEDCKKLVSEMLREHPEGYNIGSFQRLFVDRYGYHLDIQKLGYQKLAALLQIMPGVKLESTYIFPSVPAVCDSDLETSILKTQATTDIHAASNSDSESSESAPKDDNMESPWCEVGPVSINNSDKSGLELKPSQKTIELDTSKSKHPDYEPVVSDDEFSASEGDDSCLTQSAQQRKPKCNEQDSSFWQAMDLWHSSKEEENSGKKSNNVDSLDISLAEILDSSTKSTRDTLSQIPSSKYRENNGKKSDNVDSLDTSLADMFNSSSTESTTGTLSKIPSSNYREKQRSHKNYSFVADPVLPNKEKLVDDLKKADESKMQN* 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1076 1125 MobiDBLite consensus disorder prediction 439 463 - -
Gso17g1076 1125 Gene3D - 252 328 IPR041966 -
Gso17g1076 1125 MobiDBLite consensus disorder prediction 1028 1046 - -
Gso17g1076 1125 MobiDBLite consensus disorder prediction 969 997 - -
Gso17g1076 1125 CDD LOTUS 807 862 - -
Gso17g1076 1125 PANTHER EMB|CAB71880.1 25 1026 - -
Gso17g1076 1125 Pfam NYN domain 50 183 IPR021139 GO:0004540
Gso17g1076 1125 MobiDBLite consensus disorder prediction 600 626 - -
Gso17g1076 1125 MobiDBLite consensus disorder prediction 537 558 - -
Gso17g1076 1125 MobiDBLite consensus disorder prediction 325 407 - -
Gso17g1076 1125 MobiDBLite consensus disorder prediction 1028 1101 - -
Gso17g1076 1125 MobiDBLite consensus disorder prediction 328 342 - -
Gso17g1076 1125 CDD PIN_limkain_b1_N_like 50 172 - -
Gso17g1076 1125 Gene3D - 801 868 IPR041966 -
Gso17g1076 1125 MobiDBLite consensus disorder prediction 358 385 - -
Gso17g1076 1125 MobiDBLite consensus disorder prediction 892 1016 - -
Gso17g1076 1125 MobiDBLite consensus disorder prediction 922 936 - -
Gso17g1076 1125 Pfam OST-HTH/LOTUS domain 806 865 IPR025605 -
Gso17g1076 1125 Pfam OST-HTH/LOTUS domain 254 311 IPR025605 -
Gso17g1076 1125 ProSiteProfiles OST-type HTH domain profile. 806 880 IPR025605 -
Gso17g1076 1125 MobiDBLite consensus disorder prediction 534 558 - -
Gso17g1076 1125 MobiDBLite consensus disorder prediction 446 460 - -
Gso17g1076 1125 PANTHER LIMKAIN B LKAP 25 1026 IPR024768 GO:0005777|GO:0010468|GO:1903231
Gso17g1076 1125 MobiDBLite consensus disorder prediction 1055 1086 - -
Gso17g1076 1125 MobiDBLite consensus disorder prediction 386 404 - -
Gso17g1076 1125 MobiDBLite consensus disorder prediction 942 959 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1076 Gso-Chr17 10227704 10231939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1076 40 196 C2H2 Transcription Factor Family AT5G61190 40.252 3.11e-31 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1076 - - gmx:102661134 2183.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0381 5 3991479 3995974 Gso17g1076 17 10227704 10231939 GST