Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1068 ATGGGAGGCTCTGAATCCGTTTCTGTGCCACTTTCCATTTCCAATGGCGAAGAGCCCCAATTGGGTGCATCTTCTTCCCCCGCCGCTCCTCCTGAGCCATCAGATCTCAATCACGCGGCGGAGGAAGAGGCACTCTCCAGGGAGCTTCAGAGCAAGTTGGATTTGAAGGATGGGGATGAGAGTGAAGAGAGAGTTTCGGACTTGAACGATGGTAGAGGTGTTTGTGATGAAGAAACTGGTAAGCCTGACGGAGATAGTAGGGGTTGGGAGACCAATAGTTGGAATGAGGAAGTGGGTGTTGATGCTGAAGTTCATGTTTTTGGTGATGGTGATGTTCATGATGCTGGTGATGGTGATGTTCATGATGTTGGTGATGGTGATGTTGATGTTGATGTTGATGATGAAGTGGAGAAGAAGGAAGGGGGAAACAGTGGTTTAGCTCAGCACTACCCTTTGAGGCCTGAAGCTGAGGACTGTGCATTTTATATTAAAACTGGGAATTGCAAGTTTGGGTTTAATTGCAAGTTCAACCACCCCATTAGGAGGAAAAGTCAGGCTGTTAAAGAGAAGGCAGGAGAAAGAGAAGAAACCACAGAAAGATCGGGCATGACAGAATGCAAGTATTATCAAAGGTCTGGGGGTTGTAAGTTTGGTAAATCTTGTAAATATAACCACACAAGAGGAAAAATTTCAACAGCACCAGCACCACTTTTGGAACTTAACTTTCTTGGCCTGCCTATTCGTCTGGGAGAGAGAGAGTGCCCCTACTACATGCGCACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAGTTCAACCATCCTGACCCTACAGCTGTTGGAGGAGTAGGAGGTGATCCTGCTTCAGGGTATGGTAATGGAGGGTCTATTTCATTACAAGGTGTATCACAAACATCTGTACCCTCCTGGTCTTCTCCAAGAACATTAAATGAATCATCTCCTTTTGTGCCAATGATGCTTTCACCTACTCAAGGAGTTTCTACCCAAAGTTCTGATTGGAATGGATATCAGGCATCTGTCTACTTACCTGAGAGGAACATGCATCCACCTTCTACATTTGTCATGAACAACCCAGCAATTGATACAAATGTTTACATGCACCATCAAAAGCAGATGCCTGTTGATGAGTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGCTACTTCTTAAAAACTGGGGATTGTAAGTTCAAGTCTAATTGTAAATTCAACCATCCAAAGAATCGGGTTGCAAGATTACCTCCATGCAACCTCAGTGACAAGGGTCTGCCTTTGAGACCTGACCAAAGTGTCTGCTCCCATTACAGTCGCTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCGATAAACTTGCAGCCCGTGATGATTCCTGGACTTGGTCAGCAATCCTACTCAAACTCAGCTAGTGTTGAAGTGGCTGGGATATTTGGAAGTACAGGTGTTGTAACTGATGCGACAATTCAGCAATCTGTGTAA 1506 0.4515 MGGSESVSVPLSISNGEEPQLGASSSPAAPPEPSDLNHAAEEEALSRELQSKLDLKDGDESEERVSDLNDGRGVCDEETGKPDGDSRGWETNSWNEEVGVDAEVHVFGDGDVHDAGDGDVHDVGDGDVDVDVDDEVEKKEGGNSGLAQHYPLRPEAEDCAFYIKTGNCKFGFNCKFNHPIRRKSQAVKEKAGEREETTERSGMTECKYYQRSGGCKFGKSCKYNHTRGKISTAPAPLLELNFLGLPIRLGERECPYYMRTGSCKFGANCKFNHPDPTAVGGVGGDPASGYGNGGSISLQGVSQTSVPSWSSPRTLNESSPFVPMMLSPTQGVSTQSSDWNGYQASVYLPERNMHPPSTFVMNNPAIDTNVYMHHQKQMPVDEFPERPGEPECSYFLKTGDCKFKSNCKFNHPKNRVARLPPCNLSDKGLPLRPDQSVCSHYSRYGICKFGPACKFDHPINLQPVMIPGLGQQSYSNSASVEVAGIFGSTGVVTDATIQQSV* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1068 501 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 5 501 - -
Gso17g1068 501 Gene3D - 432 477 - -
Gso17g1068 501 Gene3D - 196 281 - -
Gso17g1068 501 SMART c3hfinal6 386 413 IPR000571 GO:0046872
Gso17g1068 501 SMART c3hfinal6 248 275 IPR000571 GO:0046872
Gso17g1068 501 SMART c3hfinal6 153 180 IPR000571 GO:0046872
Gso17g1068 501 SMART c3hfinal6 200 227 IPR000571 GO:0046872
Gso17g1068 501 SMART c3hfinal6 432 459 IPR000571 GO:0046872
Gso17g1068 501 SUPERFAMILY CCCH zinc finger 203 230 IPR036855 GO:0046872
Gso17g1068 501 SUPERFAMILY CCCH zinc finger 391 415 IPR036855 GO:0046872
Gso17g1068 501 ProSiteProfiles Zinc finger C3H1-type profile. 432 460 IPR000571 GO:0046872
Gso17g1068 501 MobiDBLite consensus disorder prediction 1 92 - -
Gso17g1068 501 Gene3D - 125 191 - -
Gso17g1068 501 Gene3D - 351 422 - -
Gso17g1068 501 SUPERFAMILY CCCH zinc finger 249 275 IPR036855 GO:0046872
Gso17g1068 501 PANTHER PROTEIN PHOSPHATASE RELATED 5 501 - -
Gso17g1068 501 MobiDBLite consensus disorder prediction 36 85 - -
Gso17g1068 501 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 157 179 IPR000571 GO:0046872
Gso17g1068 501 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 250 274 IPR000571 GO:0046872
Gso17g1068 501 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 434 458 IPR000571 GO:0046872
Gso17g1068 501 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 202 225 IPR000571 GO:0046872
Gso17g1068 501 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 388 413 IPR000571 GO:0046872
Gso17g1068 501 MobiDBLite consensus disorder prediction 1 22 - -
Gso17g1068 501 SUPERFAMILY CCCH zinc finger 430 458 IPR036855 GO:0046872
Gso17g1068 501 ProSiteProfiles Zinc finger C3H1-type profile. 248 276 IPR000571 GO:0046872
Gso17g1068 501 SUPERFAMILY CCCH zinc finger 152 181 IPR036855 GO:0046872
Gso17g1068 501 ProSiteProfiles Zinc finger C3H1-type profile. 200 228 IPR000571 GO:0046872
Gso17g1068 501 ProSiteProfiles Zinc finger C3H1-type profile. 386 414 IPR000571 GO:0046872
Gso17g1068 501 ProSiteProfiles Zinc finger C3H1-type profile. 153 181 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1068 Gso-Chr17 10143573 10148248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1068 150 500 C2H2 Transcription Factor Family AT3G02830 38.649 5.06e-75 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso17g1068 zf-CCCH 8.2e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1068 - - gmx:100809626 981.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0372 5 3911597 3916167 Gso17g1068 17 10143573 10148248 GST
Gso17g1068 17 10143573 10148248 Gso4g1620 4 45899783 45905506 PCT
Gso17g1068 17 10143573 10148248 Gso6g1466 6 14714910 14721237 PCT
Gso4g1620 4 45899783 45905506 Gso17g1068 17 10143573 10148248 PCT
Gso6g1466 6 14714910 14721237 Gso17g1068 17 10143573 10148248 PCT