Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso17g1068 | ATGGGAGGCTCTGAATCCGTTTCTGTGCCACTTTCCATTTCCAATGGCGAAGAGCCCCAATTGGGTGCATCTTCTTCCCCCGCCGCTCCTCCTGAGCCATCAGATCTCAATCACGCGGCGGAGGAAGAGGCACTCTCCAGGGAGCTTCAGAGCAAGTTGGATTTGAAGGATGGGGATGAGAGTGAAGAGAGAGTTTCGGACTTGAACGATGGTAGAGGTGTTTGTGATGAAGAAACTGGTAAGCCTGACGGAGATAGTAGGGGTTGGGAGACCAATAGTTGGAATGAGGAAGTGGGTGTTGATGCTGAAGTTCATGTTTTTGGTGATGGTGATGTTCATGATGCTGGTGATGGTGATGTTCATGATGTTGGTGATGGTGATGTTGATGTTGATGTTGATGATGAAGTGGAGAAGAAGGAAGGGGGAAACAGTGGTTTAGCTCAGCACTACCCTTTGAGGCCTGAAGCTGAGGACTGTGCATTTTATATTAAAACTGGGAATTGCAAGTTTGGGTTTAATTGCAAGTTCAACCACCCCATTAGGAGGAAAAGTCAGGCTGTTAAAGAGAAGGCAGGAGAAAGAGAAGAAACCACAGAAAGATCGGGCATGACAGAATGCAAGTATTATCAAAGGTCTGGGGGTTGTAAGTTTGGTAAATCTTGTAAATATAACCACACAAGAGGAAAAATTTCAACAGCACCAGCACCACTTTTGGAACTTAACTTTCTTGGCCTGCCTATTCGTCTGGGAGAGAGAGAGTGCCCCTACTACATGCGCACTGGCTCTTGTAAGTTTGGAGCAAACTGCAAGTTCAACCATCCTGACCCTACAGCTGTTGGAGGAGTAGGAGGTGATCCTGCTTCAGGGTATGGTAATGGAGGGTCTATTTCATTACAAGGTGTATCACAAACATCTGTACCCTCCTGGTCTTCTCCAAGAACATTAAATGAATCATCTCCTTTTGTGCCAATGATGCTTTCACCTACTCAAGGAGTTTCTACCCAAAGTTCTGATTGGAATGGATATCAGGCATCTGTCTACTTACCTGAGAGGAACATGCATCCACCTTCTACATTTGTCATGAACAACCCAGCAATTGATACAAATGTTTACATGCACCATCAAAAGCAGATGCCTGTTGATGAGTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGCTACTTCTTAAAAACTGGGGATTGTAAGTTCAAGTCTAATTGTAAATTCAACCATCCAAAGAATCGGGTTGCAAGATTACCTCCATGCAACCTCAGTGACAAGGGTCTGCCTTTGAGACCTGACCAAAGTGTCTGCTCCCATTACAGTCGCTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCGATAAACTTGCAGCCCGTGATGATTCCTGGACTTGGTCAGCAATCCTACTCAAACTCAGCTAGTGTTGAAGTGGCTGGGATATTTGGAAGTACAGGTGTTGTAACTGATGCGACAATTCAGCAATCTGTGTAA | 1506 | 0.4515 | MGGSESVSVPLSISNGEEPQLGASSSPAAPPEPSDLNHAAEEEALSRELQSKLDLKDGDESEERVSDLNDGRGVCDEETGKPDGDSRGWETNSWNEEVGVDAEVHVFGDGDVHDAGDGDVHDVGDGDVDVDVDDEVEKKEGGNSGLAQHYPLRPEAEDCAFYIKTGNCKFGFNCKFNHPIRRKSQAVKEKAGEREETTERSGMTECKYYQRSGGCKFGKSCKYNHTRGKISTAPAPLLELNFLGLPIRLGERECPYYMRTGSCKFGANCKFNHPDPTAVGGVGGDPASGYGNGGSISLQGVSQTSVPSWSSPRTLNESSPFVPMMLSPTQGVSTQSSDWNGYQASVYLPERNMHPPSTFVMNNPAIDTNVYMHHQKQMPVDEFPERPGEPECSYFLKTGDCKFKSNCKFNHPKNRVARLPPCNLSDKGLPLRPDQSVCSHYSRYGICKFGPACKFDHPINLQPVMIPGLGQQSYSNSASVEVAGIFGSTGVVTDATIQQSV* | 502 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso17g1068 | 501 | PANTHER | TRANSCRIPTION FACTOR C3H FAMILY-RELATED | 5 | 501 | - | - | |
Gso17g1068 | 501 | Gene3D | - | 432 | 477 | - | - | |
Gso17g1068 | 501 | Gene3D | - | 196 | 281 | - | - | |
Gso17g1068 | 501 | SMART | c3hfinal6 | 386 | 413 | IPR000571 | GO:0046872 | |
Gso17g1068 | 501 | SMART | c3hfinal6 | 248 | 275 | IPR000571 | GO:0046872 | |
Gso17g1068 | 501 | SMART | c3hfinal6 | 153 | 180 | IPR000571 | GO:0046872 | |
Gso17g1068 | 501 | SMART | c3hfinal6 | 200 | 227 | IPR000571 | GO:0046872 | |
Gso17g1068 | 501 | SMART | c3hfinal6 | 432 | 459 | IPR000571 | GO:0046872 | |
Gso17g1068 | 501 | SUPERFAMILY | CCCH zinc finger | 203 | 230 | IPR036855 | GO:0046872 | |
Gso17g1068 | 501 | SUPERFAMILY | CCCH zinc finger | 391 | 415 | IPR036855 | GO:0046872 | |
Gso17g1068 | 501 | ProSiteProfiles | Zinc finger C3H1-type profile. | 432 | 460 | IPR000571 | GO:0046872 | |
Gso17g1068 | 501 | MobiDBLite | consensus disorder prediction | 1 | 92 | - | - | |
Gso17g1068 | 501 | Gene3D | - | 125 | 191 | - | - | |
Gso17g1068 | 501 | Gene3D | - | 351 | 422 | - | - | |
Gso17g1068 | 501 | SUPERFAMILY | CCCH zinc finger | 249 | 275 | IPR036855 | GO:0046872 | |
Gso17g1068 | 501 | PANTHER | PROTEIN PHOSPHATASE RELATED | 5 | 501 | - | - | |
Gso17g1068 | 501 | MobiDBLite | consensus disorder prediction | 36 | 85 | - | - | |
Gso17g1068 | 501 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 157 | 179 | IPR000571 | GO:0046872 | |
Gso17g1068 | 501 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 250 | 274 | IPR000571 | GO:0046872 | |
Gso17g1068 | 501 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 434 | 458 | IPR000571 | GO:0046872 | |
Gso17g1068 | 501 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 202 | 225 | IPR000571 | GO:0046872 | |
Gso17g1068 | 501 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 388 | 413 | IPR000571 | GO:0046872 | |
Gso17g1068 | 501 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Gso17g1068 | 501 | SUPERFAMILY | CCCH zinc finger | 430 | 458 | IPR036855 | GO:0046872 | |
Gso17g1068 | 501 | ProSiteProfiles | Zinc finger C3H1-type profile. | 248 | 276 | IPR000571 | GO:0046872 | |
Gso17g1068 | 501 | SUPERFAMILY | CCCH zinc finger | 152 | 181 | IPR036855 | GO:0046872 | |
Gso17g1068 | 501 | ProSiteProfiles | Zinc finger C3H1-type profile. | 200 | 228 | IPR000571 | GO:0046872 | |
Gso17g1068 | 501 | ProSiteProfiles | Zinc finger C3H1-type profile. | 386 | 414 | IPR000571 | GO:0046872 | |
Gso17g1068 | 501 | ProSiteProfiles | Zinc finger C3H1-type profile. | 153 | 181 | IPR000571 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso17g1068 | Gso-Chr17 | 10143573 | 10148248 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso17g1068 | 150 | 500 | C2H2 Transcription Factor Family | AT3G02830 | 38.649 | 5.06e-75 | 239 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Gso17g1068 | zf-CCCH | 8.2e-09 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso17g1068 | - | - | gmx:100809626 | 981.474 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso5g0372 | 5 | 3911597 | 3916167 | Gso17g1068 | 17 | 10143573 | 10148248 | GST | |
Gso17g1068 | 17 | 10143573 | 10148248 | Gso4g1620 | 4 | 45899783 | 45905506 | PCT | |
Gso17g1068 | 17 | 10143573 | 10148248 | Gso6g1466 | 6 | 14714910 | 14721237 | PCT | |
Gso4g1620 | 4 | 45899783 | 45905506 | Gso17g1068 | 17 | 10143573 | 10148248 | PCT | |
Gso6g1466 | 6 | 14714910 | 14721237 | Gso17g1068 | 17 | 10143573 | 10148248 | PCT |