Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1066 ATGGCTCCCCAAACCATTTCCATTCTCAACCTCTTACCAGAACCTGATGTCTTCATTCACACTTCCCATGGAACACGCATTCCAGCCCACGCACCCATTCTGGCTTCTATGTCCCCGGTTCTGGAGAACTTGATAGATCGCCCACGTAAGCATCGGAGCTCCGAGAGAATAATCCAAATCCACGGCGTCCCCTGCGACGCTGTCACCGCCTTCGTCCGATTCCTCTACTCCTCCAGGTGTACGGAGGAAGAGATTGACCAGTACGGGATGCACCTCCTTGCATTGTCCCACGTGTACATGGTGCAGCAACTGAAACAGAGGTGCATCAAGGGTTTGACCCACCGTTTGACGACGGAGAGCGTCGTCGACGTGCTGCAACTCGCGCGTCTCTGCGACGCGCCGGATCTCCACCTCCGCTGCATGAAGCTCCTCGCCAAGAATTTCAAGGCGGTGGAAGCAACCGAGGGATGGAAGTTCCTCGTGAAACACGACCCCTGGCTCGAACTCGACATTCTCCGCTTCATCGACGAACACGAAACAAGGAAAAAGAAATCGAGGAGGTATAGGATGGAACAGGGGATATACGCGGAGCTGAGCGAGGCGATGGAGTGTTTGGAACACATATGCTATGAGGGGTGCACCCACGTTGGACCGTACGACGCGGAGGTGAAGAGGGAGAGGACGCCGTGTGGGAGATTCGCCACGTGCCAGGGTCTTCAGGTTCTGATCCGCCACTTTGCCACGTGCGAGAAGAAGGTGCGCGGTGGCTGCGTGCGGTGCAAGAGAATGTGGCAGCTCTTTCGACTCCATTCCTATGTTTGTCACGACACCGATTCCTCCTGCAAGGTTCCCTTTTGCAGGCAATTTCAATTGAGAATGCAGCAAGAGAAAAGGAAAGATGATGCTAAGTGGAAACTACTAGCGAGGAAGGTGGCCTCAGCCAAAGTCATGTCTTCATTGTCACTGCCAAAGAGGAAGCGAGATGAAGAAACAAGAGTGACGATGGACAATCCCGGGATTAGAAGTTTTAAATTACTATGA 1041 0.5341 MAPQTISILNLLPEPDVFIHTSHGTRIPAHAPILASMSPVLENLIDRPRKHRSSERIIQIHGVPCDAVTAFVRFLYSSRCTEEEIDQYGMHLLALSHVYMVQQLKQRCIKGLTHRLTTESVVDVLQLARLCDAPDLHLRCMKLLAKNFKAVEATEGWKFLVKHDPWLELDILRFIDEHETRKKKSRRYRMEQGIYAELSEAMECLEHICYEGCTHVGPYDAEVKRERTPCGRFATCQGLQVLIRHFATCEKKVRGGCVRCKRMWQLFRLHSYVCHDTDSSCKVPFCRQFQLRMQQEKRKDDAKWKLLARKVASAKVMSSLSLPKRKRDEETRVTMDNPGIRSFKLL* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1066 346 SMART BTB_4 15 116 IPR000210 GO:0005515
Gso17g1066 346 Gene3D TAZ domain 189 315 IPR035898 -
Gso17g1066 346 CDD BACK 117 164 - -
Gso17g1066 346 Gene3D - 117 188 - -
Gso17g1066 346 ProSiteProfiles BTB domain profile. 15 84 IPR000210 GO:0005515
Gso17g1066 346 Pfam TAZ zinc finger 199 286 IPR000197 -
Gso17g1066 346 Pfam BTB/POZ domain 15 114 IPR000210 GO:0005515
Gso17g1066 346 PANTHER BTB/POZ AND TAZ DOMAIN PROTEIN 1 344 - -
Gso17g1066 346 SUPERFAMILY POZ domain 16 114 IPR011333 -
Gso17g1066 346 Gene3D Potassium Channel Kv1.1; Chain A 13 116 IPR011333 -
Gso17g1066 346 SMART TAZ_2 192 287 IPR000197 -
Gso17g1066 346 SUPERFAMILY TAZ domain 191 295 IPR035898 -
Gso17g1066 346 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 1 344 IPR044513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1066 Gso-Chr17 10087665 10090850 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Gso17g1066 BTB 1.1e-11 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1066 - - gmx:100807120 713.761
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0369 5 3853905 3857413 Gso17g1066 17 10087665 10090850 GST
Gso17g1066 17 10087665 10090850 Gso4g1609 4 45735707 45738465 PCT
Gso4g1609 4 45735707 45738465 Gso17g1066 17 10087665 10090850 PCT