Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1060 ATGCCTATGTCTCTGTCTCTGTCAACCGTGCCTGCGTTCAATTCTCTCACAATGGCTGAATCCTGCCTCCTATCTCTCCCTTCCCTCTTCTACGCCAAAAACAAAACCCTTTCTCTCTCAATTCCCACTAATCCTCTCAACCTGCAATTCCCATGCTCAAACTCTTCTCTTTTTCCCCTCACCACCAAGACAACGCGCCACTCTTCTCTCCTCACATTCGTGGCTCAGACATCTGGTTGGGCCAAAGAAGGGGAGGAGGAAGAAGCCGCGTGGGAGAACCAAGGCGACACTGCGTGGGGAACTGAAGAAGGTGGCGATGATATAGAAGATGGCGGCGAAGGGGGTTTCGCTGAAGAAGAAGCTGAAGAAGTTAAGATCTTCGTTGGGAACCTGCCTTTCGACTTCGACAGCGAGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAGGTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACCATGAGTACAATCGAAGAGCTTGAGAAGGCTGTCAAGATGTTCAGTGGTTATGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCTGCTCCAAAAGGAGCACAGCCTGAACGCCCACCGCGCCCACCACAATCCTTTAGAGTCTATGTTGGCAACTTGCCATGGGATGTTGACAATTCTCGGCTGGAGCAAATTTTCAGTGAACATGGTAAGGTTGAGGATGCTCGGGTGGTCTATGACAGAGAGACTGGTCGATCACGTGGTTTTGGCTTTGTCACGATGTCCAGTGAGACTGATATGAATGATGCAATTGCTGCCCTTGATGGTCAGAGTTTGGATGGGAGGGCAATCAGAGTGAATGTTGCAGCCCAAAGGCCTAAACCTAGCTCGTTTTGA 909 0.4972 MPMSLSLSTVPAFNSLTMAESCLLSLPSLFYAKNKTLSLSIPTNPLNLQFPCSNSSLFPLTTKTTRHSSLLTFVAQTSGWAKEGEEEEAAWENQGDTAWGTEEGGDDIEDGGEGGFAEEEAEEVKIFVGNLPFDFDSEKLASLFEQAGTVEVAEVIYNRATDRSRGFGFVTMSTIEELEKAVKMFSGYELNGRVLTVNKAAPKGAQPERPPRPPQSFRVYVGNLPWDVDNSRLEQIFSEHGKVEDARVVYDRETGRSRGFGFVTMSSETDMNDAIAALDGQSLDGRAIRVNVAAQRPKPSSF* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1060 302 CDD RRM_HP0827_like 125 202 - -
Gso17g1060 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 295 IPR000504 GO:0003723
Gso17g1060 302 MobiDBLite consensus disorder prediction 89 114 - -
Gso17g1060 302 PANTHER RIBONUCLEOPROTEIN 8 95 - -
Gso17g1060 302 PANTHER RIBONUCLEOPROTEIN 110 301 - -
Gso17g1060 302 CDD RRM_HP0827_like 218 293 - -
Gso17g1060 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 126 195 IPR000504 GO:0003723
Gso17g1060 302 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 219 289 IPR000504 GO:0003723
Gso17g1060 302 SUPERFAMILY RNA-binding domain, RBD 120 211 IPR035979 GO:0003676
Gso17g1060 302 SUPERFAMILY RNA-binding domain, RBD 209 299 IPR035979 GO:0003676
Gso17g1060 302 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 124 202 IPR000504 GO:0003723
Gso17g1060 302 Gene3D - 75 205 IPR012677 -
Gso17g1060 302 Gene3D - 206 301 IPR012677 -
Gso17g1060 302 PANTHER OS02G0815200 PROTEIN 110 301 - -
Gso17g1060 302 PANTHER OS02G0815200 PROTEIN 8 95 - -
Gso17g1060 302 SMART rrm1_1 125 198 IPR000504 GO:0003723
Gso17g1060 302 SMART rrm1_1 218 291 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1060 Gso-Chr17 10045885 10048296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1060 126 296 Eukaryotic Initiation Factors Gene Family AT3G16380 34.239 1.24e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1060 - - gmx:100804984 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0363 5 3807516 3810163 Gso17g1060 17 10045885 10048296 GST
Gso17g1060 17 10045885 10048296 Gso4g1601 4 45662882 45665948 PCT
Gso17g1060 17 10045885 10048296 Gso6g1479 6 14910458 14913166 PCT
Gso4g1601 4 45662882 45665948 Gso17g1060 17 10045885 10048296 PCT
Gso6g1479 6 14910458 14913166 Gso17g1060 17 10045885 10048296 PCT