Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1058 ATGGAGATGGAACGCGTCTTCGAGTTTCCTCACACTCACATGGATCGGCGCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAGGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTTGCTCCTTCAAGGGGTCCCTCAGAAAATACCACTAGTTCTCTATTTGTTAAGCCAGTTGCTCGAAATGGTTCTCCCCCTTGGCGAGATGATGACAAAGATGGGCATTACATGTTTGCGCTTGGAGAAAATTTAACTTCTCGCTATAAGATACATAGCAAAATGGGTGAAGGAACTTTTGGGCAGGTCTTAGAATGCTGGGATAGAGAAAGGAAGGAAATGGTTGCCGTAAAAATTGTCCGTGGTATTAAGAAGTATCGAGAAGCAGCCATGATAGAAATTGAGGTGTTGCAACAGCTTGGTAAACACGATAAAGGAGGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATAGCATTCATGCATGACTTGCGCATGATTCATACTGACCTGAAGCCTGAAAACATACTACTAGTTTCACCAGAGTATGTCAAAGTTCCTGACTACAAGAGTTCATCTAGATCACCAAGTTCCTATTTCAAGAGAGTTCCCAAATCAAGTGCTATAAAGGTTATTGATTTTGGCAGCACCACTTATGAGCGAGAAGATCAGAATTACATTGTATCAACTCGTCATTATAGGGCTCCTGAAGTTATCCTTGGACTTGGCTGGAGCTATCCATGTGATATCTGGAGTGTGGGATGTATCTTGGTTGAGTTATGCACGGGCGGAGCTTTGTTTCAGACTCACGAAAATTTGGAGCATCTTGCCATGATGGAAAGGGTACTTGGTCCATTACCACAGCCCATGTTGAAGAGAGTCGACCGACATGCTGAGAAGTATGTTAGAAGGGGTAGATTGGACTGGCCTGAGGGTGCAACCTCAAGGGAGAGTATCAAAGCTGTAATGAAGCTTCCTAGGCTTCAGAACCTTGTAATGCAGCATGTAGATCATTCAGCTGGCGATCTCATACATCTCTTGCAGGGGTTACTTAGATATGACCCCTCTGAAAGACTTACAGCCAAGGAAGCTCTTAGACATTCCTTCTTTATGAGAGATCAATTTAGAAGATAA 1293 0.4346 MEMERVFEFPHTHMDRRPRKRARLGWDIPEVPKAQVGLFCGQDVGTISSFAPSRGPSENTTSSLFVKPVARNGSPPWRDDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAVKIVRGIKKYREAAMIEIEVLQQLGKHDKGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLECIAFMHDLRMIHTDLKPENILLVSPEYVKVPDYKSSSRSPSSYFKRVPKSSAIKVIDFGSTTYEREDQNYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGGALFQTHENLEHLAMMERVLGPLPQPMLKRVDRHAEKYVRRGRLDWPEGATSRESIKAVMKLPRLQNLVMQHVDHSAGDLIHLLQGLLRYDPSERLTAKEALRHSFFMRDQFRR* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1058 430 SMART serkin_6 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1058 430 SUPERFAMILY Protein kinase-like (PK-like) 85 425 IPR011009 -
Gso17g1058 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Gso17g1058 430 ProSiteProfiles Protein kinase domain profile. 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g1058 430 CDD PKc_CLK 85 423 - -
Gso17g1058 430 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 430 - -
Gso17g1058 430 Gene3D Transferase(Phosphotransferase) domain 1 152 423 - -
Gso17g1058 430 Gene3D Phosphorylase Kinase; domain 1 85 178 - -
Gso17g1058 430 PANTHER KINASE AFC1 1 430 - -
Gso17g1058 430 Pfam Protein kinase domain 98 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1058 Gso-Chr17 10025585 10029535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1058 103 423 Core Cell Cycle Gene Families AT1G76540 25.602 5.41e-26 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Gso17g1058 Pkinase 1.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1058 K08287 - gmx:100804452 884.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0359 5 3774128 3778009 Gso17g1058 17 10025585 10029535 GST