Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1043 ATGGAGCCCATGGACATCGTTGGTAAATCAAAGGAAGACGCTTCGCTTCCTAAAGCAACAATGACAAAAATTATTAAAGAGATGTTACCCCCAGATGTACGTGTTGCAAGAGATGCCCAAGATCTATTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTCTCGTCAGAATCCAATGAAGTCTGTAATAGAGAGGATAAACGGACAATTGCACCTGAGCATGTATTGAAGGCTCTACAGGTTCTAGGATTTGGTGAGTACATTGAAGAAGTTTATGCAGCATATGAACAGCACAAACTGGAGACCATGGACTCTTTAAGAGGGGGTGGTGGTGGTGGTAAATGGAACAATGGAGCTGAGATGACTGAGGAAGAAGCATTAGCAGAGCAGCAAAGGATGTTTGCTGAGGCACGTGCTAGGATGAATGGTGGAGCCATTGCTTCTAAGCAGCCAGATGCTGACCAAAGTTTAGATAGCTAA 480 0.4333 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNREDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKLETMDSLRGGGGGGKWNNGAEMTEEEALAEQQRMFAEARARMNGGAIASKQPDADQSLDS* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1043 159 Gene3D Histone, subunit A 4 146 IPR009072 GO:0046982
Gso17g1043 159 PANTHER PROTEIN DR1 HOMOLOG 1 158 IPR044255 -
Gso17g1043 159 SUPERFAMILY Histone-fold 12 146 IPR009072 GO:0046982
Gso17g1043 159 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1043 Gso-Chr17 9866546 9871626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1043 1 155 CCAAT-DR1 Transcription Factor Family AT5G23090 83.544 4.83e-92 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gso17g1043 CBFD_NFYB_HMF 4.1e-22 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1043 K21751 - gmx:100798439 305.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0123 5 1377711 1382136 Gso17g1043 17 9866546 9871626 GST