Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1040 ATGGCAGAAACAGAAGACAAAACCCTTCAAGCCTCGCCCATGAACGAAACCAAGAAGATGAAGAAGAATAAGAATAAGAAGAAGAGCGACAAAAAAAGACCTCGGGAGATTGCTACCGAGGAGCGTCCAGAGGAAGAGGAGAATGAGAATAATACAGATAGCGATGGAGAATCCTCGAAGAAGAAGAAGAAGAAGAAGGTGGAAGGAGAAAGTGAAGTGAAAGAGAAAAAGGTGAAGAACAATGGTGGCTCTGGAATTATGAGCACTGAGTCATTTGAATCTCTCGGATTGTCTGAACCTACTTATAAAGCCATTATGGATATGGGATTCCACCACATGACTCAGATTCAAGCGAGGGCAATTCCACCGCTTTTGATTGGAAAAGATGTTCTTGGTGCTGCAAGGACTGGTTCTGGAAAAACTCTTGCCTTCTTAATTCCTGCTGTGGAGCTGTTGTACAATGTTAAATTTACGCCTCGTAATGGAGCTGGTGTTATTGTTATATGCCCTACTAGAGAGCTTGCAATACAGACACATGCTGTGGCCAAGGAGCTGCTCAAGTATCATTCACAAACTCTTGGATTGGTTATTGGAGGTTCAGCTAGAAAAATTGAAGCTGAACGCATTGCTAAAGGGATAAATTTATTGGTAGGAACTCCTGGTCGTCTTCTAGATCATCTTCAAAACACAAAAGGATTCATATATAAAAACTTGAAGTGCCTCATGATTGATGAAGCTGACAGGATTTTGGAAGCAAACTTTGAGGAGGAAATGAAGCAGATTATCAAGATCCTTCCAAAGAATAGGCAAACAGCTTTATTTTCGGCTACACAAACAAAGAAGGTTGAGGATCTTGCCCGTCTGTCATTTCAGACGACTCCTATCTATATTGATGTAGATGATGGGAGAACCAAGGTCACAAATGAGGGATTGCTTCAGGGTTATGTTGTGGTTCCCTGTGCCAAGCGATTTATTGTTCTCTATTCCTTTTTGAAGAGACACCAGTCAAAAAAAGTGATGGTTTTTTTCTCTTCATGCAACTCTGTCAAATTCCACGCAGACATTCTTAATCTTATTCAATTGAATTGCTCGAGTATTCATGGAAAACAAAAGCAGCAGTCCCGAACAACTACCTTCTTTGACTTCTGCAAAGCAGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGCTGTGGACTGGATTGTGCAGTATGATCCACCTGATGAACCAAAGGAATATATTCACAGGGTTGGTAGAACAGCTCGTGGTGAAGGTGGGAAAGGAAATGCTTTGCTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCGCTATCTGAAGGCAGCTAAGGTCCCTGTTAAAGAGTATGCATATGATGAAAAGAAGGTGGCAAACGTACAATCTCACCTGGAGAATTTGGTGGTCAACAATTTCTATTTGAACAAGATGGCAAAAGAAGCTTATAGATCATACATATTAGCATACAATTCTCATTCTATGAAGGATATATTCAACATTCACCATCTTGATTTGCAGGCTGTTGCTTCTTCGTTCTGTTTTTCAAACCCACCAAATGTGAGTCTAAACATAAACAGCAGTAAGCAAAGGAATAAAATGCGTAAAGTTGATGGAAGTAGACATGGATTCAGTGGCGACAATCCTTATGGAAAGAGAAATGCTGATGATAAGCGGCAGTTTGTGAGGTACTAG 1728 0.408 MAETEDKTLQASPMNETKKMKKNKNKKKSDKKRPREIATEERPEEEENENNTDSDGESSKKKKKKKVEGESEVKEKKVKNNGGSGIMSTESFESLGLSEPTYKAIMDMGFHHMTQIQARAIPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYNVKFTPRNGAGVIVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGSARKIEAERIAKGINLLVGTPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRTKVTNEGLLQGYVVVPCAKRFIVLYSFLKRHQSKKVMVFFSSCNSVKFHADILNLIQLNCSSIHGKQKQQSRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYAYDEKKVANVQSHLENLVVNNFYLNKMAKEAYRSYILAYNSHSMKDIFNIHHLDLQAVASSFCFSNPPNVSLNINSSKQRNKMRKVDGSRHGFSGDNPYGKRNADDKRQFVRY* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1040 575 Gene3D - 35 300 IPR027417 -
Gso17g1040 575 Gene3D - 311 550 IPR027417 -
Gso17g1040 575 Pfam Domain of unknown function (DUF4217) 472 532 IPR025313 -
Gso17g1040 575 MobiDBLite consensus disorder prediction 536 568 - -
Gso17g1040 575 CDD SF2_C_DEAD 311 441 - -
Gso17g1040 575 PANTHER RNA HELICASE 61 569 - -
Gso17g1040 575 MobiDBLite consensus disorder prediction 1 87 - -
Gso17g1040 575 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 61 569 - -
Gso17g1040 575 SMART helicmild6 350 431 IPR001650 -
Gso17g1040 575 Pfam Helicase conserved C-terminal domain 326 430 IPR001650 -
Gso17g1040 575 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 242 250 IPR000629 -
Gso17g1040 575 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 121 296 IPR014001 -
Gso17g1040 575 Pfam DEAD/DEAH box helicase 114 285 IPR011545 GO:0003676|GO:0005524
Gso17g1040 575 SMART DUF4217_3 471 534 IPR025313 -
Gso17g1040 575 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 236 445 IPR027417 -
Gso17g1040 575 CDD DEADc_DDX18 101 298 IPR044773 GO:0003724|GO:0005524
Gso17g1040 575 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 323 470 IPR001650 -
Gso17g1040 575 MobiDBLite consensus disorder prediction 53 79 - -
Gso17g1040 575 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 90 118 IPR014014 GO:0003724
Gso17g1040 575 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 298 IPR027417 -
Gso17g1040 575 SMART ultradead3 109 314 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1040 Gso-Chr17 9843024 9849001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1040 85 450 Eukaryotic Initiation Factors Gene Family AT3G19760 28.338 9.36e-48 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1040 K13179 - gmx:100797375 1038.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0120 5 1357761 1363302 Gso17g1040 17 9843024 9849001 GST