Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1027 ATGTATTCCTCAAATACCTTCCTCAACGGCAATGACCTAATCTCGTACCCTAACCAACCATTTTGCTTTAGGCCTTTTTCCTTTGAAAGCAACCCAACTTATAATTTTTCAAAAGAAGAAGCCAATTCCAATTACGCCCTTCCTCCTCCTCCACCTCCTCCTCCTTTGTCCTTTTTCCAATCTCCCTTTGACGAAAATATCTTCCTAGAACACCACCACCATGACTTGCTCCTACTTCATCAGTACTCTCTGACTGACTCTGGAGTATCAAAAAACCTTGAAGTTGTGGCCGAAATCTCGCCAATTCCTTGCCCTGAACAAGGTGGAATTGCGATGGAGCACACTCCAAGAAAGAGATCCAGCAAGAGAGACCGCCACAGCAAGATCAACACCGCGAGAGGCCTCAGGGATCGAAGAATGAGGCTGTCCCTCGAAGTCGCGAAGCGGTTTTTCGGGTTGCAAGACATGCTAGGCTTTGACAAGGCCAGCAAAACCGTGGAGTGGTTACTGAACCAAGCAAAGGGTGAAATCAAACAACTTGCAAGGGAAAAAACAAGTGTTGTTGGTGGTGGTGGCAAGAGTGCATCATCAACTTCGGAATGCGAAGGGGTGTCTAGCTTGGACGAGGTTGCAGTGAGTACTGGAGGAGTTAATAACGAGGAGCAAGAGAGGGAGACAGTACCAAACATGATGAAGAGAAGAAAAAGTAAGGTTTGTAGAAAGAGTGCATTCAATGCTATTGATAAGGAATCGAGGGAAAAGGCAAGAGAAAGGGCAAGGGAAAGAACAAGAGAGAAGATGAGAACTCGGAGAGTACTTGTTTCTGATGCATCAAACCTGAACCGTTTGAGTTCTTGGAACCCCTTTGAAACGGTTGAAGACTCTGCGGGTACTACACATCATCCCTCCTTGGATGTGCACCTTCATGAGGCTGATCAAGAACCAATTAGTTCTCACAACGTGAAGGAGCATAATTTGGGAGAGGACATGGCGCATGAAGATAATTCTTTGGCGCTCATGAACAAGTGGAGCCCAACTATGTTGTTCAATTCTCTTCACAACTCAGGAATCCTTCAGGAACATCAATTCGCAGAATTTCAGTCCTTGGGGAAACAATGGGAAGCCTACAGCAATCAAATCTGA 1143 0.4567 MYSSNTFLNGNDLISYPNQPFCFRPFSFESNPTYNFSKEEANSNYALPPPPPPPPLSFFQSPFDENIFLEHHHHDLLLLHQYSLTDSGVSKNLEVVAEISPIPCPEQGGIAMEHTPRKRSSKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVEWLLNQAKGEIKQLAREKTSVVGGGGKSASSTSECEGVSSLDEVAVSTGGVNNEEQERETVPNMMKRRKSKVCRKSAFNAIDKESREKARERARERTREKMRTRRVLVSDASNLNRLSSWNPFETVEDSAGTTHHPSLDVHLHEADQEPISSHNVKEHNLGEDMAHEDNSLALMNKWSPTMLFNSLHNSGILQEHQFAEFQSLGKQWEAYSNQI* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1027 380 ProSiteProfiles R domain profile. 249 266 IPR017888 -
Gso17g1027 380 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 14 351 IPR005333 GO:0003700
Gso17g1027 380 MobiDBLite consensus disorder prediction 190 204 - -
Gso17g1027 380 ProSiteProfiles TCP domain profile. 122 180 IPR017887 -
Gso17g1027 380 PANTHER TRANSCRIPTION FACTOR TCP18 14 351 - -
Gso17g1027 380 MobiDBLite consensus disorder prediction 106 127 - -
Gso17g1027 380 Pfam TCP family transcription factor 121 269 IPR017887 -
Gso17g1027 380 MobiDBLite consensus disorder prediction 187 206 - -
Gso17g1027 380 MobiDBLite consensus disorder prediction 212 239 - -
Gso17g1027 380 MobiDBLite consensus disorder prediction 249 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1027 Gso-Chr17 9718910 9720839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1027 118 263 TCP Transcription Factor Family AT3G18550 45.912 6.84e-30 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gso17g1027 TCP 1.7e-47 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1027 - - gmx:100803395 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0107 5 1227068 1229257 Gso17g1027 17 9718910 9720839 GST