Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1024 ATGAGCTGGCGCAGGGTATTGAATTCAGCACAGGCCTTGGCTGCACACACTTTCCTTTTGTGCTTCACTCTCTTCCTCGTTCTCAAGCTCGATCACAACCTCTCTTGTTCTTGGTGGGTAATATTTTCACCTCTTTGGATGTTCCATGGTGTTGTGGCTCGAGGAAGGTTTTCATTACCTGCGCCATCTGCTCCACGTAATCGAAATTGGGCACCATGCCATGCCGTCATTGCAACACCATTGCTTATTGCATTTGAATTGCTCCTTTGTATATACCTTGAGAGCTTATATGATCTTGGCTATGCTGCAGTTGATCTAAAGATAGTGTTTCTTCCCTTACTAACATTTGAAATCATTATTCTCATTGACAATTTCAGGATGTGTAAGGCTCTAATGCCAGGGGATGAAGAAAATATGAGTGATGAGGCTATATGGGAAACTCTCCCTCATTTTTGGGTTGCTATCTCTATGGTGTTCTTCATTGCTGCTACAGTCTTCACACTCCTAAAACTTAGTGGTGATGTAGGTGCTCTGGGCTGGTGGGACTTGTTTATTAATTTTGCTATTGCCGAGTGCTTTGCTTTCCTTGTATGTACAAAGTGGTCCAATCCAGTCATTCATAGAAATTCAAGAGAAGCCAGTAGTTCATCTTCAACTACGATTACATATCTTGACTGGAACAGTGGTTTAGTGGTTTCTACAGACGAAAATCAACACCAGGGGAGAATGTGTAGCCTTCAAGACATAGGAGGTCATTTCATGAAAGTACCAATTATTGTATTCCAGGTTCTTCTTTGTATGCATCTAGAGGGAACACCTGCTTGTGCTGTACATATACCTCTTCCAGTTATTTTCTCTCCCCTTTTCCTACTGCAAGGAGCTGGGGTAATGTTATCTGCATCTAAATTAGGGGAGAAACTTGTGCTTCTGCTACGAAGTGGAGCTGGTGGAGGAATATATTTTAGATTTTCTTCAAGAGCTCATGATTGCTTGGGGTTCTTGCATCATGGTTCTAGATTATTAGGTTGGTGGTCAATTGATGAAGGGAGTCGGGAAGAACAAGCACGACTATACCATGAGGGAGCAATTGGGTATAATACATTTTGTGGTTATCCTCCTGAGATTGTTAAGAAAATGCCAAAAAAGGAACTTGCTGAGGAGGAGAAAGTGTTATGCAGAGTTTGTTTCGAGGGAGAGATTAACGTTGTACTGCTCCCATGTAGGCATCGTGTTCTTTGCAGCACTTGCTCAGAGAAGTGTAAGAAGTGCCCGATTTGCCGTGACTCCATTGCTGAGCGTCTGCCTGTATATGATGTTTAG 1320 0.4258 MSWRRVLNSAQALAAHTFLLCFTLFLVLKLDHNLSCSWWVIFSPLWMFHGVVARGRFSLPAPSAPRNRNWAPCHAVIATPLLIAFELLLCIYLESLYDLGYAAVDLKIVFLPLLTFEIIILIDNFRMCKALMPGDEENMSDEAIWETLPHFWVAISMVFFIAATVFTLLKLSGDVGALGWWDLFINFAIAECFAFLVCTKWSNPVIHRNSREASSSSSTTITYLDWNSGLVVSTDENQHQGRMCSLQDIGGHFMKVPIIVFQVLLCMHLEGTPACAVHIPLPVIFSPLFLLQGAGVMLSASKLGEKLVLLLRSGAGGGIYFRFSSRAHDCLGFLHHGSRLLGWWSIDEGSREEQARLYHEGAIGYNTFCGYPPEIVKKMPKKELAEEEKVLCRVCFEGEINVVLLPCRHRVLCSTCSEKCKKCPICRDSIAERLPVYDV* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1024 439 Pfam Transmembrane Fragile-X-F protein 28 291 IPR019396 -
Gso17g1024 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 375 439 IPR013083 -
Gso17g1024 439 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 439 - -
Gso17g1024 439 ProSiteProfiles Zinc finger RING-type profile. 392 427 IPR001841 -
Gso17g1024 439 SMART ring_2 392 426 IPR001841 -
Gso17g1024 439 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 439 - -
Gso17g1024 439 SUPERFAMILY RING/U-box 382 434 - -
Gso17g1024 439 Pfam Zinc finger, C3HC4 type (RING finger) 389 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1024 Gso-Chr17 9675451 9683867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1024 1 439 C3H Transcription Factor Family AT1G73950 66.953 0.0 615
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1024 - - gmx:100791390 864.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0106 5 1197016 1212400 Gso17g1024 17 9675451 9683867 GST