Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1022 ATGTCATCAAGTGGAACCATTTGGAGCTATGAGGAAGAAAAAGCATTTGAGAATGCCATAGCTATGCATTGGATTGAGGAATCCTCAAAAGAGCAATGGGAGAAAATTGCTTCAGCAGTTCCCAGCAAAAGCATGGAAGATGTGAAGCAACATTACCAGGTTCTAGTAGAGGATGTAAGTGCAATAGAGGCAGGTCACATATCATTCCCAAACTATGCTGCTTCTGAGGAAATCACATCTTCAAATAAGGACTTTCATGGCTCTTCCAAGGCCACAAGCTCAGATAAAAGATCAAATTGTAATTATGGACGTGGTTTTTCTGGGTTAGGACATGACTCCACCACTCATAGTAGTGGTAAAGGAGGCTTGTCAAGGTCATCAGAACAAGAAAGAAGAAAAGGAATCCCATGGACTGAAGAGGAACACAGGTTATTTTTACTTGGTCTAGAGAAGTTTGGAAAAGGAGATTGGAGAAGCATTTCAAGGAACTTTGTGATATCTAGGACTCCCACTCAAGTGGCAAGCCATGCACAAAAGTACTTCATAAGGTTGAATTCAATGAATAGAGACAGGAGGAGGTCTAGTATCCATGATATCACTAGTGTGAACAATGGAGATGTGGCTAATAACCAAGCACCTATTACAGGGCAGCATAGTAGCACAATTCCTTCAAACACAATGGGTGTAGGACAATCCCTTAAGCATAGAGTTCAGGGTCACATACCACCTGGTTTAGGCATGTATGGAACACCAGTTGGACATCCTGTGGCTGCTCCTCCAGGGCACATGGCATCTGCAGTTGGCACTCCTGTCATGCTTCCTCCTGGACCCCACCCCCATGCTCATCCTCATCCACCTTATGTTCTTCCTCTTGCTTACCCAATGGCACCTCCAACAATGCATCAATAA 909 0.4378 MSSSGTIWSYEEEKAFENAIAMHWIEESSKEQWEKIASAVPSKSMEDVKQHYQVLVEDVSAIEAGHISFPNYAASEEITSSNKDFHGSSKATSSDKRSNCNYGRGFSGLGHDSTTHSSGKGGLSRSSEQERRKGIPWTEEEHRLFLLGLEKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVANNQAPITGQHSSTIPSNTMGVGQSLKHRVQGHIPPGLGMYGTPVGHPVAAPPGHMASAVGTPVMLPPGPHPHAHPHPPYVLPLAYPMAPPTMHQ* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1022 302 PANTHER TRANSCRIPTION FACTOR KUA1 1 301 - -
Gso17g1022 302 Gene3D - 1 69 - -
Gso17g1022 302 SUPERFAMILY Homeodomain-like 131 186 IPR009057 -
Gso17g1022 302 MobiDBLite consensus disorder prediction 108 124 - -
Gso17g1022 302 SMART sant 133 183 IPR001005 -
Gso17g1022 302 SMART sant 4 58 IPR001005 -
Gso17g1022 302 PANTHER TRANSCRIPTION FACTOR MYBS1 1 301 - -
Gso17g1022 302 ProSiteProfiles SANT domain profile. 3 52 IPR017884 -
Gso17g1022 302 CDD SANT 8 56 IPR001005 -
Gso17g1022 302 SUPERFAMILY Homeodomain-like 8 62 IPR009057 -
Gso17g1022 302 ProSiteProfiles SANT domain profile. 137 185 IPR017884 -
Gso17g1022 302 ProSiteProfiles Myb-like domain profile. 8 56 IPR001005 -
Gso17g1022 302 Pfam Myb-like DNA-binding domain 136 181 IPR001005 -
Gso17g1022 302 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Gso17g1022 302 MobiDBLite consensus disorder prediction 102 135 - -
Gso17g1022 302 Gene3D - 135 187 - -
Gso17g1022 302 ProSiteProfiles Myb-like domain profile. 129 181 IPR001005 -
Gso17g1022 302 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 133 183 IPR006447 GO:0003677
Gso17g1022 302 CDD SANT 136 181 IPR001005 -
Gso17g1022 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 185 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1022 Gso-Chr17 9660839 9662438 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso17g1022 Myb_DNA-binding 9.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1022 - - gmx:778049 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0105 5 1192638 1194288 Gso17g1022 17 9660839 9662438 GST