Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1011 ATGTCTAATCCCAACTGGGAAGCGGATAAAATGTTAGATTTGTATATTCACGATTATCTCACGAAGAGACAATTACATGCTACTGCAAGAATATTTCAGGCCGAAGGAAATGTTTCAACGGATCCTATTGTTATAGATGCACCTAGTGGTTTTCTTTTTGAGTGGTGGTCTGTCTTCTGGGACATATATATTGCCAGGGCAAATCAGAAGCTCCAAGATACAGCTCAGAAGCACCAAGAAGCAGCAGTATCTTACAGTAAGAGTCAACAAATTAAGGCTCGACTAATGCAGAAGCAACTGGAGCAAGAGCTTCAGAATACAAACCAGAATCAGCAAATGCAATTCTTATTGCAAAGACATGCTCAGCAGCAGCAGCAACGTCTGCGTGGAACTCAACTTATTAGTGGCAGTGCTAGCTGTCCTATTAGCAGTGATCCTTTGATGAGGCAGAACCGGGCAACTTCTAATGCTAATACAACAAAAACTTATGAAGACAGGTTGAAGCTTCCACTTCAGAAAGATGCCTTAGATGACACAAGCATTCAGCAAAAAGTAATTGATGATGTTGCTCAGCTTCTAAACCCAAACCATGCCTTATTGTTGAAAGCAGCAGCAACAACTGGTGAACAGGCTACAGGACAGACATTGCTCAGTGCACCTAGTATTTTACAGGGGGATATTCAGCATGTCCAAAATCTGAACCAGAAGCTTCCAGGGTCTACACAAGACTTAAACAGTGATATGAATGCAATGATGAGGTCTCAAGCTGTTGTTTCAGAAGGATCCTTTATCAGTTGTCATGGTTCAAATCAAGGTGGTAGCAATTTGACTCTTAAAGGATGGCCTCTAGCAGGACTGGATGAGCTCCGCTCAGGATTTCTCCAGCCGAATAATTTGATGCAGTCTTCACAATCTTTCCATCAACTTTCTGTACGGCAGCAACTTATGCTTCAGGCACAACAAAATTTGATTTCTCCTTCTGCCAGTGATTTTGAGAGCAGAAGACTCAGGATGCTTGTTAATGATCAAAACATGGCTCTTTTGAAAGATGGCCAATCAAATTCTTTAGGTGATTTAATTCCTGATAACAGGTCACCCGCTCAAGTTGGTTCCTCAGTGCTGCCTCATCCTGACTCAGATATGTTCCTTAAGCAACAAATTCAAAAGAGTAGTCAGCAGCATCAACAATGTTCACAGCACCCTCTTTCAAGCCATCAGTCTGAATCTCTCCAGAAGCAAGAAAAAAATGGTCCTGGAACCATGACTGTAGAGGGCAATGTGTCCAATACCTTACAAGGAAACAACCAGGTTTCCATAAGTAAAACAGGGCGGAAGAGAAAACCAGCATCATCTTCTGGTCCTGCCAATAGTTCTGGAACTGCAAACACTACAGGACCACCTATCAGTTCACCTAAAACACCATCTACACAAACACCTGCAGACATGATGACAGTGTCAACTCTGCAACAGAATGTTCCTTCCTCTAAGTCATCATTTATGTTTGGTACTGATGGTTTGGGCCCACTTACGTCAGCACAGAATCAATTGGCTGATATGGATCACCTTGTGGGTGATGGATGTTTGGGCGACAATGTTGAGTCATTCTTATCTCCTGATGATACAGATGTTAGCAAAAAAATTGGCAAAGAAATCTCATTCAAGGATATCAAGCATATAGGGGCAAGTTTGCATAAAGTTGAGTGTTGTCACTTCTCATCAGATGGAAAACTTCTTGCTACAGGTGGCCACGATAATAAGGCTTCTTTGTGGTGCACAGAATTGTTTAACCTGAAATCTACACTTGAAGAGCACAGTGAATGGATAACTGATGTTCGATTTTGTCCAAGCATGTTGCGTGTTGCTACATCCTCAGCAGACAAAACTGTTAGGGTTTGGGATGTTGATAATCCAAGTTATTCTCTTCGTACATTCACAGGACATGCAACAACTGTGATGTCACTAGATTTTCACCCTAGCAAAGATGACCTTATTTGCTCTTGTGACAATAGTGAGATAAGATACTGGAGTATTAAAAATGGTAGTTGTACTGGGGTTTTCAAGGGTGGTGCAACTCAGATGAGATTTCAACCTTGCTTGGGAAGGCTTCTTGCAGCTGCAGTGGATAATTTCGTATCCATTTTTGATGTGGAAACCCTGGGTTGCAGACTTAAATTACAGGGCCATAATAATCTTGTCCGATCTGTGTGCTGGGATTTGTCTGGAAAATTTTTGGCTTCTCTCAGTGATGATATGGTTAGAGTATGGAATGTTGCGTCCGGTGGCAAAGGGGAATGCATTCACGAGTTGAAAGATTGTAGGAACAAATTCAGCACCTGTGTTTTCCATCCCTTCTATCCTTTGCTGGTCATTGGCTGCCATGAGTATCGAATGTTACTGGATTGGTGGCTTCAACTAGTCATGACAAGCATTTCAAGATCTGGAAGTGACTAG 2451 0.4198 MSNPNWEADKMLDLYIHDYLTKRQLHATARIFQAEGNVSTDPIVIDAPSGFLFEWWSVFWDIYIARANQKLQDTAQKHQEAAVSYSKSQQIKARLMQKQLEQELQNTNQNQQMQFLLQRHAQQQQQRLRGTQLISGSASCPISSDPLMRQNRATSNANTTKTYEDRLKLPLQKDALDDTSIQQKVIDDVAQLLNPNHALLLKAAATTGEQATGQTLLSAPSILQGDIQHVQNLNQKLPGSTQDLNSDMNAMMRSQAVVSEGSFISCHGSNQGGSNLTLKGWPLAGLDELRSGFLQPNNLMQSSQSFHQLSVRQQLMLQAQQNLISPSASDFESRRLRMLVNDQNMALLKDGQSNSLGDLIPDNRSPAQVGSSVLPHPDSDMFLKQQIQKSSQQHQQCSQHPLSSHQSESLQKQEKNGPGTMTVEGNVSNTLQGNNQVSISKTGRKRKPASSSGPANSSGTANTTGPPISSPKTPSTQTPADMMTVSTLQQNVPSSKSSFMFGTDGLGPLTSAQNQLADMDHLVGDGCLGDNVESFLSPDDTDVSKKIGKEISFKDIKHIGASLHKVECCHFSSDGKLLATGGHDNKASLWCTELFNLKSTLEEHSEWITDVRFCPSMLRVATSSADKTVRVWDVDNPSYSLRTFTGHATTVMSLDFHPSKDDLICSCDNSEIRYWSIKNGSCTGVFKGGATQMRFQPCLGRLLAAAVDNFVSIFDVETLGCRLKLQGHNNLVRSVCWDLSGKFLASLSDDMVRVWNVASGGKGECIHELKDCRNKFSTCVFHPFYPLLVIGCHEYRMLLDWWLQLVMTSISRSGSD* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1011 816 SMART WD40_4 679 715 IPR001680 GO:0005515
Gso17g1011 816 SMART WD40_4 552 591 IPR001680 GO:0005515
Gso17g1011 816 SMART WD40_4 718 756 IPR001680 GO:0005515
Gso17g1011 816 SMART WD40_4 594 633 IPR001680 GO:0005515
Gso17g1011 816 SMART WD40_4 637 676 IPR001680 GO:0005515
Gso17g1011 816 ProSiteProfiles Trp-Asp (WD) repeats profile. 559 590 IPR001680 GO:0005515
Gso17g1011 816 Gene3D - 689 801 IPR015943 GO:0005515
Gso17g1011 816 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 644 681 - -
Gso17g1011 816 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 800 IPR044716 GO:0003714
Gso17g1011 816 Gene3D - 543 688 IPR015943 GO:0005515
Gso17g1011 816 Coils Coil 90 126 - -
Gso17g1011 816 MobiDBLite consensus disorder prediction 356 479 - -
Gso17g1011 816 MobiDBLite consensus disorder prediction 383 479 - -
Gso17g1011 816 Pfam LisH 10 36 IPR006594 GO:0005515
Gso17g1011 816 ProSiteProfiles Trp-Asp (WD) repeats profile. 644 685 IPR001680 GO:0005515
Gso17g1011 816 ProSiteProfiles Trp-Asp (WD) repeats profile. 601 642 IPR001680 GO:0005515
Gso17g1011 816 ProSiteProfiles Trp-Asp (WD) repeats profile. 725 760 IPR001680 GO:0005515
Gso17g1011 816 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Gso17g1011 816 CDD WD40 556 794 - -
Gso17g1011 816 SUPERFAMILY WD40 repeat-like 557 794 IPR036322 GO:0005515
Gso17g1011 816 MobiDBLite consensus disorder prediction 356 372 - -
Gso17g1011 816 ProSitePatterns Trp-Asp (WD) repeats signature. 620 634 IPR019775 -
Gso17g1011 816 Pfam WD domain, G-beta repeat 597 633 IPR001680 GO:0005515
Gso17g1011 816 Pfam WD domain, G-beta repeat 564 590 IPR001680 GO:0005515
Gso17g1011 816 Pfam WD domain, G-beta repeat 641 676 IPR001680 GO:0005515
Gso17g1011 816 Pfam WD domain, G-beta repeat 721 756 IPR001680 GO:0005515
Gso17g1011 816 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 601 636 - -
Gso17g1011 816 PANTHER LISH-SSDP-WD40 1 800 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1011 Gso-Chr17 9519492 9528464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1011 576 761 Miscellaneous Gene Families AT5G08390 28.061 4.09e-18 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Gso17g1011 WD40 0.00023 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1011 - - gmx:100801265 1506.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g1011 17 9519492 9528464 Gso17g1011 17 9519492 9528464 ECH