Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1007 ATGGAATCACCCTCAGAACTAAGCCTTGATTGCAAGCCTCAGAGCTATTCCTTGCTACTCAAATCATTTGGAGATCAGACTGATCAGACCTACAAGCTTGAAGAATTCCTCTCTCGCTTGGAGGAAGAACGTCTCAAGATTGATGCTTTCAAGCGCGAGCTTCCTCTCTGCATGCAACTTCTCACCAACGCCATGGAAGCTTCAAGGCAGCAACTACAGGCCTATAAAGTAAACCATGGAACAAAGCCAGTTCTCGAAGAATTCATACCCATGAAGCACTTAGCCTCAGATCAAAGCTCAGAGAAGGCAACAAACATGTCTGACAAGGCAAATTGGATGACATCTGCACAATTATGGAGCCAAGCAAGTGAAGGAACAAAACAACAACCAACAATCACAACACCTAAAGAATCTGATATAGGCTTCAGCATAAGTCCAAAGCTGGCTCTAGACAACAAACAGAGGAACGGTGGAGGAGCCTTTCTTCCATTCTCCAAAGAAAGAAACTCTTGCCAGGGCTCTACATTGCGGCCTCTTCCTGAACTGGCTCTTGCCTATGCGGAGAAAGAAATGGAGGACAAGAAATTACGTCCAGAGGTAGAAATTAAGGGAGTTTCGTGCCAGAGTAAGAAGGAGAATTCGGGAAGTGATGGAACTGTGGTTGATCAAGGAAAAGGTGGTAGCCCAGTTGCATCGTCTCATGCAACAACAACCACAACCACTAGCAGTGCACAAACTCATAGGAAAGCTAGAAGGTGTTGGTCACCAGACCTGCACCGAAGATTTGTTAATGCCCTTCAAATGCTTGGTGGATCACAAGTGGCGACCCCAAAGCAGATAAGGGAGTTGATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATTTGCAGAAATATAGGCTTCACACAAGAAGACCCAGTCCAAGTCCTCAAGCGGTTGGAGCAGCACCACAGCTTGTGGTCCTCGGCGGAATCTGGGTCCCACCGGAATATGCCACGGCAGCACACACAGCCACCCCTACTCTCTACGGCGCCCACCCTACCTCCCACGCGCCGCCGCCACATTACTGCGCTGCCACTCCCATGCCACAAGACTTCTACACCACGGCGCCGCCACAGCCGCTGCTTCCGCCGCCTCCGCCGCACCACAACGCTCTGCACCACCTGCACATGTACAAGGCGGCACCGCACGGCCAAGGCTCGCCGGAATCCGACGTTCCCAGCAACGGAGAGCGATCGGAGAGTATTGAGGATGGGAAGTCGGAGAGTAGCAGCTGGAAGGGGGAGAATGAAGGGGAGAGGAAAGGGATTAGTAAAGGGAGCAATGGGAGTGAGATCACTCTCAAGTTCTAG 1359 0.5063 MESPSELSLDCKPQSYSLLLKSFGDQTDQTYKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAMEASRQQLQAYKVNHGTKPVLEEFIPMKHLASDQSSEKATNMSDKANWMTSAQLWSQASEGTKQQPTITTPKESDIGFSISPKLALDNKQRNGGGAFLPFSKERNSCQGSTLRPLPELALAYAEKEMEDKKLRPEVEIKGVSCQSKKENSGSDGTVVDQGKGGSPVASSHATTTTTTSSAQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQAVGAAPQLVVLGGIWVPPEYATAAHTATPTLYGAHPTSHAPPPHYCAATPMPQDFYTTAPPQPLLPPPPPHHNALHHLHMYKAAPHGQGSPESDVPSNGERSESIEDGKSESSSWKGENEGERKGISKGSNGSEITLKF* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1007 452 SUPERFAMILY Homeodomain-like 246 307 IPR009057 -
Gso17g1007 452 MobiDBLite consensus disorder prediction 397 452 - -
Gso17g1007 452 Coils Coil 33 53 - -
Gso17g1007 452 MobiDBLite consensus disorder prediction 206 252 - -
Gso17g1007 452 MobiDBLite consensus disorder prediction 207 221 - -
Gso17g1007 452 MobiDBLite consensus disorder prediction 229 249 - -
Gso17g1007 452 Gene3D - 248 306 - -
Gso17g1007 452 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 452 - -
Gso17g1007 452 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 249 304 IPR006447 GO:0003677
Gso17g1007 452 MobiDBLite consensus disorder prediction 412 440 - -
Gso17g1007 452 Coils Coil 58 78 - -
Gso17g1007 452 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 246 306 IPR017930 -
Gso17g1007 452 Pfam Myb-like DNA-binding domain 251 302 IPR001005 -
Gso17g1007 452 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 452 IPR044787 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1007 Gso-Chr17 9473261 9476690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1007 1 452 G2-like Transcription Factor Family AT2G03500 50.620 2.44e-130 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Gso17g1007 Myb_DNA-binding 9.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1007 - - gmx:100797015 878.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g1007 17 9473261 9476690 Gso17g1007 17 9473261 9476690 ECH
Gso17g1007 17 9473261 9476690 Gso4g1260 4 32332617 32335802 PCT
Gso17g1007 17 9473261 9476690 Gso6g1804 6 21347798 21351288 PCT
Gso4g1260 4 32332617 32335802 Gso17g1007 17 9473261 9476690 PCT
Gso6g1804 6 21347798 21351288 Gso17g1007 17 9473261 9476690 PCT