Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1006 ATGACAATGGACGATGATAGCTCCATATATGTAGGGGGCCTTCCCTACGACGCCACCGAACAAACCATTCGCACAGTCTTCAATTTGTATGGCGCCATCCTTGATGTTAAGATAATCAACGACCAACGCACTAGGGGCAAGTGCTATTGTTTTGTTACTTTCACAAATCCTAGGTCTGCAATTGATGCCATCAACGACATGAATGGCAGAACCATTGACGGGCGTGTGATTAAAGTTAATGGGGTGAGGGCTCGTGGGGGCAGGTCAAATTTTGGCAGAGAACGTTATTATTATCAAAATGATGAGAGGAAGGGAGATTGGGATTGTGGTAGAGACCGAGAGCGAGATTATGATCATGATAATAATGATAGGGATGGATATAGGAATCGGAGCAGCGATTGGACTCGAGACTGTGATAAGTCTAGAGACCGTGATCAGGATAGGGATAGAAGGTTTGAGCATATTCATGATTATGATCAAGCTAGGGATGCTATGTTAGATAATGTCTGGAACCCAGAGGAAGATAGAATTGAAAATGAACAAGAACATAGCAGGGGACATGACAGAGATGTGGATAGAGAACACAGCATAGATTTGAATATAGTCAGGAAAATGGATAGGACCAGTGATCCTGATAGAAGTTTTGATGAGGATAAAAAAGATCAGTCAAGGAGAAACAATGACTTGAATGTTTCAAATCAACATAGCATGGATCTTTCGTCAGATTCAGCTGGTACTCACAATGATCAGGTAGAAGCTCAATTAGAGAGGTCAACTCAACAGCTTGATCAACTAAAAAAGGAGGTTTCTCAGATGGAAGAGGGATTGGAAGAGAAAAGACTCCATGTTAAGGAATTACAAAAGCAATCTAAGAAACTGGAGGATGCACTGATCAATGCAAAGAAAAACTCTTCATATCATCAGATGCAGTTGATGAAGCTGCATAAATGTTTTCTGCAAGTAAATGATTGCACAGAAGGACTAAGAACTACCGAAAAAGAACTTCAGGCTCTAATTGTGACAGCAATGTCAGAGATTGATGGTGATGAATTAAAGGATAGACAACTAACAAATGGAAGTCTTGATGGTAGATTGTAA 1098 0.4053 MTMDDDSSIYVGGLPYDATEQTIRTVFNLYGAILDVKIINDQRTRGKCYCFVTFTNPRSAIDAINDMNGRTIDGRVIKVNGVRARGGRSNFGRERYYYQNDERKGDWDCGRDRERDYDHDNNDRDGYRNRSSDWTRDCDKSRDRDQDRDRRFEHIHDYDQARDAMLDNVWNPEEDRIENEQEHSRGHDRDVDREHSIDLNIVRKMDRTSDPDRSFDEDKKDQSRRNNDLNVSNQHSMDLSSDSAGTHNDQVEAQLERSTQQLDQLKKEVSQMEEGLEEKRLHVKELQKQSKKLEDALINAKKNSSYHQMQLMKLHKCFLQVNDCTEGLRTTEKELQALIVTAMSEIDGDELKDRQLTNGSLDGRL* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1006 365 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 360 - -
Gso17g1006 365 SMART rrm1_1 8 80 IPR000504 GO:0003723
Gso17g1006 365 MobiDBLite consensus disorder prediction 109 148 - -
Gso17g1006 365 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Gso17g1006 365 SUPERFAMILY RNA-binding domain, RBD 4 103 IPR035979 GO:0003676
Gso17g1006 365 CDD RRM_SF 9 80 - -
Gso17g1006 365 MobiDBLite consensus disorder prediction 227 249 - -
Gso17g1006 365 Coils Coil 248 303 - -
Gso17g1006 365 MobiDBLite consensus disorder prediction 176 249 - -
Gso17g1006 365 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 360 - -
Gso17g1006 365 Gene3D - 2 195 IPR012677 -
Gso17g1006 365 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Gso17g1006 365 MobiDBLite consensus disorder prediction 176 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1006 Gso-Chr17 9467865 9471696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1006 7 79 Eukaryotic Initiation Factors Gene Family AT2G36660 32.877 1.18e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1006 - - gmx:100797556 730.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g1006 17 9467865 9471696 Gso17g1006 17 9467865 9471696 ECH