Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g1005 ATGAAGGATCCAGTGGAGGATCAAGTGAAATCTAGGAGGGCAGTGCAGAAACCCAAGGATTTTAGAAGAAGAGATAGAAGAAGAAACCAATGCAAACAAGAGAAATTACAAGACACACAATTGGTTTCCTCTGCTTGCAAAAGTCTTGTGTTTCCTGCAAGGCCTGGCTATGGCCAGCTGGGGACAAAGTGTCTGGTCAAAGCCAACCACTTCCTGGCAGATATATCCGCATCTGACTTGAGCCATTACAATGTTAAAATAACACCTGAGGTTACTTCTCGTAAAACAAGCAAAGCCATCATAGCTGAGTTAGTGAGGCTTCACAGGAACACTGATTTGGCAATGAAGCTTCCTGTTTATGATGGAGGAAGAAATCTCTACACTGCTGGCTTGCTTTCTTTTGCATACAAAGAGTTCACCATACTATTGAGAGAGGATGATGAGGGCACTGGTTCTACCAGGGAAAGAGAATTTGAAGTGGTGATCAGGTTTGCAGCTCGTGTTAGCATGAATCAGTTACGTGAGCTTCTGAGTGGCAAGCAAGTGGACACTCCACAAGAAGCACTTACTGTCATTGACACTGTATTGAGGGAGCTTGCAGCTCAGAGCTACGTGTCAATTGGGAGGTTTCTATATTCTCCGGATTTAAGAAAACCACAGCAGCTAGGTGGTGGCCTGGAATCGTGGTGCGGCTTCTATCAGAGTATAAGGCCAACTCAGATGGGATTGTCACTTAATATTGACATGTCATCAATGGCGTTTATTGAACCACTTCCTGTAATTGACTTTGTTGCTCAAATTTTGGGAAAAGATGTGCTCTCAAAGCCATTGTCAGATGCAGATCGTGTCAAGATTAAGAAGGCCTTAAGAGGTGTGAAAGTTGAGGTTACACATAGAGGAAGTTTTCGAAGGAAGTACAGGATTACAGGATTGACATCACAGCCTACAAGGGAGCTTAATTTCCCCGTCGATGAGAAAATGAACATGAAATCAGTAGTTGATTACTTTCAAGAAATGTATGGATATACAATCATATATTCTCATCTACCCTGCCTTCAAGTAGGAAGCCAAAAGAAGGTGAACTATTTGCCTATGGAGGCATGCAAGATAGTTGGGGGTCAGAGATATACAAAAGGGCTTAACGAAAAGCAGATAACTTCTCTGCTAAAGGTCTCATGCCAGAGACCACGTGAACAAGAGACAGATATTCTACAGACAATTCACCAAAATGATTATGAGTATAATCCCTATGCCAAGGAGTTTGGGATCAGCATTGACAGCAAGCTTGCATCAGTTGAGGCTCGGGTTCTTCCTGCTCCATGGTTGAAATATCACGAGACTGGAAGGGAGAAAGAATACCTGCCACAAGTTGGTCAATGGAACATGATGAACAAGAAAGTTATAAACGGAAGCACTGTAAGATATTGGGCTTGTATTAATTTCTCACGAAGTATCCAAGAAAGTACTGCTCGCGGGTTTTGCCAACAGTTAGTTCAAATATGCCAAATCTCAGGCATGGAATTTAGTCAAGACCCTGTGATTCCAATATATTCAGCAAAACCTGATCTGGTAAAGAAAGCCTTGAAGTATGTACATTCTGCTGTACTTGATAAACTTGGTGGGAAAGAACTAGAGTTGTTGATTGCCATTCTTCCAGACAACAATGGCTCTCTGTATGGCGATCTCAAAAGAATCTGTGAAACCGATCTGGGGTTGATTTCTCAGTGCTGTCTTACAAAACACGTATTCAAGATCAATAGGCAGTATTTGGCAAATGTGGCACTAAAGATCAATGTCAAGATGGGAGGAAGGAACACAGTACTTTTGGATGCCCTAAGTTGGAGGATCCCATTGGTTAGTGACATTCCAACAATAATTTTTGGAGCAGATGTAACACATCCAGAATCTGGAGAGGACCCTTGTCCATCCATTGCTGCTGTTGTAGCCTCCCAGGACTGGCCGGAAGTAACAAAGTACGCAGGATTGGTATGCGCTCAGCCTCATCGTGAGGAACTCATTCAAGATCTTTTTAAATGTTGGAAGGATCCTCATCATGGTATAGTTTATGGTGGCATGATCAGAGAGCTGTTACTCTCTTTTAAGAAGGCAACCGGACAAAAACCATTGAGGATAATATTTTACAGGGATGGGGTAAGTGAAGGACAGTTCTACCAGGTTTTGTTGTATGAGCTTGATGCCATCCGTAAGGCTTGTGCATCTTTGGAACCTAGTTACCAACCTCCGGTAACATTTGTTGTGGTTCAAAAGCGACATCACACTAGACTCTTCTCAAACAATCATGACGACAGAAATAGCACTGATAAGAGTGGGAATATCTTACCTGGTACTGTGGTGGATTCTAAGATCTGTCATCCTACGGAATTCGACTTCTATTTATGCAGTCATGCGGGAATTCAGGGTACAAGTAGACCAGCTCATTATCATGTTCTGTGGGACGAGAACAATTTCACTGCTGATGAGATCCAATCTCTGACCAACAACTTGTGCTACACCTATGCAAGATGTACACGATCAGTTTCTGTAGTGCCTCCTGCGTACTATGCTCATTTGGCAGCTTACAGAGCTCGATTCTACATGGAACCTAATGTCCATGAAATTGCTAAATCTCGAGGTGCAAGGTCAAAAGATGAGTCAGTTCGGCCACTACCTGCTCTGAAAGAGAAGGTGAAGAATGTAATGTTTTATTGTTGA 2712 0.4263 MKDPVEDQVKSRRAVQKPKDFRRRDRRRNQCKQEKLQDTQLVSSACKSLVFPARPGYGQLGTKCLVKANHFLADISASDLSHYNVKITPEVTSRKTSKAIIAELVRLHRNTDLAMKLPVYDGGRNLYTAGLLSFAYKEFTILLREDDEGTGSTREREFEVVIRFAARVSMNQLRELLSGKQVDTPQEALTVIDTVLRELAAQSYVSIGRFLYSPDLRKPQQLGGGLESWCGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKDVLSKPLSDADRVKIKKALRGVKVEVTHRGSFRRKYRITGLTSQPTRELNFPVDEKMNMKSVVDYFQEMYGYTIIYSHLPCLQVGSQKKVNYLPMEACKIVGGQRYTKGLNEKQITSLLKVSCQRPREQETDILQTIHQNDYEYNPYAKEFGISIDSKLASVEARVLPAPWLKYHETGREKEYLPQVGQWNMMNKKVINGSTVRYWACINFSRSIQESTARGFCQQLVQICQISGMEFSQDPVIPIYSAKPDLVKKALKYVHSAVLDKLGGKELELLIAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKINRQYLANVALKINVKMGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDPCPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKCWKDPHHGIVYGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFSNNHDDRNSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYMEPNVHEIAKSRGARSKDESVRPLPALKEKVKNVMFYC* 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g1005 903 Pfam Argonaute linker 2 domain 400 444 IPR032472 -
Gso17g1005 903 MobiDBLite consensus disorder prediction 1 15 - -
Gso17g1005 903 Pfam Mid domain of argonaute 455 532 IPR032473 -
Gso17g1005 903 Gene3D - 615 903 IPR036397 GO:0003676
Gso17g1005 903 SMART DUF1785_2 205 257 IPR014811 -
Gso17g1005 903 Gene3D paz domain 252 376 - -
Gso17g1005 903 Pfam Piwi domain 547 866 IPR003165 GO:0003676
Gso17g1005 903 Pfam Argonaute linker 1 domain 206 255 IPR014811 -
Gso17g1005 903 PANTHER PROTEIN ARGONAUTE 10 12 902 - -
Gso17g1005 903 SMART PAZ_2_a_3 262 394 IPR003100 GO:0005515
Gso17g1005 903 SUPERFAMILY PAZ domain 253 412 IPR036085 GO:0005515
Gso17g1005 903 ProSiteProfiles PAZ domain profile. 258 372 IPR003100 GO:0005515
Gso17g1005 903 Gene3D - 436 609 - -
Gso17g1005 903 Pfam PAZ domain 283 388 IPR003100 GO:0005515
Gso17g1005 903 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 12 902 - -
Gso17g1005 903 SMART Piwi_a_2 546 867 IPR003165 GO:0003676
Gso17g1005 903 ProSiteProfiles Piwi domain profile. 546 867 IPR003165 GO:0003676
Gso17g1005 903 CDD Piwi_ago-like 416 866 IPR045246 -
Gso17g1005 903 Pfam N-terminal domain of argonaute 63 196 IPR032474 -
Gso17g1005 903 CDD PAZ_argonaute_like 257 371 - -
Gso17g1005 903 SUPERFAMILY Ribonuclease H-like 536 867 IPR012337 -
Gso17g1005 903 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g1005 Gso-Chr17 9437225 9455110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g1005 51 903 Eukaryotic Initiation Factors Gene Family AT5G43810 74.448 0.0 1388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g1005 K11593 - gmx:100798086 1794.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g1005 17 9437225 9455110 Gso17g1005 17 9437225 9455110 ECH
Gso17g1005 17 9437225 9455110 Gso4g1257 4 32013288 32028454 PCT
Gso17g1005 17 9437225 9455110 Gso6g1805 6 21487351 21504296 PCT