Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0990 ATGTTATCAGCTGCACCCAGCATGAATACTAACACCTCTGTGATCACCGCCATCACCACCACACGGGACGAACCCGACTATGACAGCAGCTCCTCCTCGATTACGGTACCGGAATCAAGCAGGAGCTGGATGACCAACCTCAGCTTCGGCAGCCGGCGCCGCCGGAGCTCGGTCTCCGTCTGCTCCTCCACCGCGGAGAGCCCGCACGCAAAGCCCCACAAGGCGAACCATGCTGCATGGGAGGCGATGCGGCGGCTCAGGCGGGACAAGGGGCAGGTGGGGCTGGACCACTTCCGGCTGTTGCGCCGGCTGGGGAGCGGCGACATCGGGAACGTGTACCTTTGCCAGATAAGGAACCCCATTGTGGGGTTGCCGCAGTGCTTCTATGCCATGAAAGTGGTTGACAGAGAGGCACTTGCTATAAGGAAGAAGCTGCAGAGAGCGGAGATGGAGAAGGAGATTCTGGCCATGCTTGATCACCCTTTCTTGCCTACTTTGTATACTGAGTTTGACGCTTCTCATTACTCTTGCTTGCTCATGGAGTTCTGCCCCGGTGGAGACTTGTATGCTGCTCGCCAACGCCAGCCCGGGAAGCGCTTTTCCATAGCATCCTCTAAGTTTTATGCGGCTGAGACACTATTGGCACTGGAGTATCTTCACATGATGGGAATAGTGTACAGGGATTTGAAGCCAGAGAATGTTCTTGTGAGGGAGGATGGACACATTATGCTTACAGATTTTGATCTATCGCTGAAATGTGACGTTGTTCCCAAGCTGTTAAGGAGCAAGACCAGATTAGAACGCAGCATCAAGAGTACAAAGAGATCCATGCCAGCCTGCACTGCCCCCATGCAGCCTGTGCTGTCATGTTTCTTGTCATCATCAAGGAAGAAAAAGAAAGCCACTGTGACAACAGTTATAAGGGAAAATGTTGAGGTGGAAGAAAATGATCCAGAGCTGGTGGCTGAGCCCATTGATGCCAAGTCCAAGTCATTTGTGGGGACACATGAGTACTTGGCACCAGAAGTGATTCTGGGCCAAGGACATGGGAGTGCAGTGGATTGGTGGACATTTGGGGTGTTCTTGTATGAGATGTTATATGGTAGAACACCCTTCAAAGGTGAAAACAATGAGAAAACTCTCGTCAACATTTTGAAGCAGCCCTTGGCTTTCCCTAGAATTGTAGTTGGCACCAGCAAGGAGTTTGAAGAGATGGTGAACGTTCAAGACCTTATAAGCAAGTTGTTGGTGAAGAATCCTAGTAAGAGAATTGGAAGCCTCATGGGTTCTGTTGAGATCAAAAGGCATGAGTTCTTCAAAGGTGTAAATTGGGCCTTAATTAGAGCAGTTAGGCCCCCTGAGGTCCCTAGTGAAATGAACAAACTTAGGAGTAGGGTTTTGCTGCCAAAACTAAGCAAAACAGATAGGGATCAGCCTTATCAGCTTAGAAGTCATCATTTTGAATACTTCTAA 1473 0.4997 MLSAAPSMNTNTSVITAITTTRDEPDYDSSSSSITVPESSRSWMTNLSFGSRRRRSSVSVCSSTAESPHAKPHKANHAAWEAMRRLRRDKGQVGLDHFRLLRRLGSGDIGNVYLCQIRNPIVGLPQCFYAMKVVDREALAIRKKLQRAEMEKEILAMLDHPFLPTLYTEFDASHYSCLLMEFCPGGDLYAARQRQPGKRFSIASSKFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLTDFDLSLKCDVVPKLLRSKTRLERSIKSTKRSMPACTAPMQPVLSCFLSSSRKKKKATVTTVIRENVEVEENDPELVAEPIDAKSKSFVGTHEYLAPEVILGQGHGSAVDWWTFGVFLYEMLYGRTPFKGENNEKTLVNILKQPLAFPRIVVGTSKEFEEMVNVQDLISKLLVKNPSKRIGSLMGSVEIKRHEFFKGVNWALIRAVRPPEVPSEMNKLRSRVLLPKLSKTDRDQPYQLRSHHFEYF* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0990 490 Gene3D Phosphorylase Kinase; domain 1 96 182 - -
Gso17g0990 490 Gene3D Transferase(Phosphotransferase) domain 1 183 252 - -
Gso17g0990 490 PANTHER PROTEIN KINASE PINOID 2 19 490 - -
Gso17g0990 490 Gene3D Transferase(Phosphotransferase) domain 1 326 457 - -
Gso17g0990 490 Pfam Protein kinase domain 328 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0990 490 Pfam Protein kinase domain 99 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0990 490 CDD STKc_phototropin_like 96 456 - -
Gso17g0990 490 Coils Coil 131 151 - -
Gso17g0990 490 ProSiteProfiles Protein kinase domain profile. 98 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0990 490 SMART serkin_6 98 439 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0990 490 SUPERFAMILY Protein kinase-like (PK-like) 78 461 IPR011009 -
Gso17g0990 490 PANTHER FLIPPASE KINASE 1-RELATED 19 490 - -
Gso17g0990 490 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0990 Gso-Chr17 9260933 9263315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0990 16 490 AGC Kinase Gene Family AT2G26700 58.271 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Gso17g0990 Pkinase 5.1e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0990 K08286 - gmx:100775924 936.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0990 17 9260933 9263315 Gso17g0990 17 9260933 9263315 ECH
Gso17g0990 17 9260933 9263315 Gso4g1234 4 29584266 29587122 PCT
Gso4g1234 4 29584266 29587122 Gso17g0990 17 9260933 9263315 PCT