Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0985 ATGAGTTTCTCTGACCATATTCCATCCTTCATGATGTCACCGCCGTCATTTTCCACAGACACGGATGCCATTGAAGTGAGGCTTCAATTTCCAATGAACAACGAATCGTTGGAGCCACATTCACCACAGGATCGACCCCCTTCGTTCAAGAGGGCAAGGACCTGTGATAACAGCCTCTCCAATGCAATGGCATGCCCTCCAAGGATGATTCAGCACCCTGCAGTTAACAAAGGAACGAGCCACATTTTCTTCAAGACCCGCATCTGTGCAAAGTTCAGAGTTGGTGCTTGTAGAAACGGCGAGAACTGCAATTTTGCACATGGGCTTGAGGACATGAGGCAGCCGCCACCAAATTGGCAAGAGCTTGTTGGGTTGCGCGGTGAGGAGCGGCCACCGATGGCGGGGGATTGGGATGATGACCAGAAAATCATACACAAGATGAAGCTGTGCAAGAAGTATTACAATGGGGAGGAATGCCCCTATGGTGATAAGTGTAGTTTTCTTCATGAAGACCCTGCCAGGTTCAGGGATGATTCGGTGAGGTACAGGGAGAGCACATCTATAAGCATTGGAACTAATGGATCCCCCAAGTCCTATGGTGATGCCTCTAATAATTTAGAAAGCAATAGGGCTGTGAATACTGGCTTAAATGTTTTCCGGGGGAATGTTAAATCTACCTATTGGAAGACTAAACTGTGCATCAAGTTTGAGACAACAGGCCACTGCCCCTTTGGGGATGACTGTCACTTTGCTCATGGGCAAGCAGAGTTACAAGTTCCTGGTGGTCGCACTGAGGCAGAAACTGCAGGTGTCAATCCAATCTCAACTAAAGCTACCATTCCAACCTTACCAAGAGCTACATCAGTTTCTTCTAATGATGCACCTCCTAGCCACAGAGCAAGTGTACCTCCAGCAAACGAAAAGGAACGAGATAAGAAGTATTTACTGAAGTGGAAAGGACACAAGAAGATCAACCGAATTTATGGTGACTGGCTTGACGATTTGCCGCTCGTTCACAACTTGCCAGGTAGAGTGGGGACCTGA 1044 0.477 MSFSDHIPSFMMSPPSFSTDTDAIEVRLQFPMNNESLEPHSPQDRPPSFKRARTCDNSLSNAMACPPRMIQHPAVNKGTSHIFFKTRICAKFRVGACRNGENCNFAHGLEDMRQPPPNWQELVGLRGEERPPMAGDWDDDQKIIHKMKLCKKYYNGEECPYGDKCSFLHEDPARFRDDSVRYRESTSISIGTNGSPKSYGDASNNLESNRAVNTGLNVFRGNVKSTYWKTKLCIKFETTGHCPFGDDCHFAHGQAELQVPGGRTEAETAGVNPISTKATIPTLPRATSVSSNDAPPSHRASVPPANEKERDKKYLLKWKGHKKINRIYGDWLDDLPLVHNLPGRVGT* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0985 347 SUPERFAMILY CCCH zinc finger 81 114 IPR036855 GO:0046872
Gso17g0985 347 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 228 254 IPR000571 GO:0046872
Gso17g0985 347 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 108 IPR000571 GO:0046872
Gso17g0985 347 SUPERFAMILY CCCH zinc finger 226 258 IPR036855 GO:0046872
Gso17g0985 347 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 1 336 - -
Gso17g0985 347 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Gso17g0985 347 SMART c3hfinal6 227 254 IPR000571 GO:0046872
Gso17g0985 347 SMART c3hfinal6 144 171 IPR000571 GO:0046872
Gso17g0985 347 Gene3D - 141 173 - -
Gso17g0985 347 Gene3D - 221 259 - -
Gso17g0985 347 Gene3D - 76 114 - -
Gso17g0985 347 MobiDBLite consensus disorder prediction 277 297 - -
Gso17g0985 347 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Gso17g0985 347 ProSiteProfiles Zinc finger C3H1-type profile. 144 172 IPR000571 GO:0046872
Gso17g0985 347 Pfam CCCH-type zinc finger 148 169 IPR041367 -
Gso17g0985 347 PANTHER CCCH ZINC FINGER/TIS11-RELATED 1 336 IPR045877 GO:0003729
Gso17g0985 347 MobiDBLite consensus disorder prediction 277 309 - -
Gso17g0985 347 ProSiteProfiles Zinc finger C3H1-type profile. 227 255 IPR000571 GO:0046872
Gso17g0985 347 SUPERFAMILY CCCH zinc finger 144 171 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0985 Gso-Chr17 9224658 9227301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0985 229 258 C3H Transcription Factor Family AT1G68200 60.000 5.15e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso17g0985 zf-CCCH 9.3e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0985 - - gmx:100793865 725.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0985 17 9224658 9227301 Gso17g0985 17 9224658 9227301 ECH