Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0980 ATGGACGAAGATTCGCTCAAGCGCTACACCGATTGCGTTTATTTCTTGGCCTCTCCCCTCACTTGCAAGAAGGGGGCTGAATGTGAGTATCGGCATAATGAGATTGCGAGGCTTAACCCTAGGGATTGCTGGTACTGGCTATCTGGCCAATGCCTTAATCCAACCTGTGCATTTAGACACCCTCCATTGGATGGGCATACTGGAGCGCCAGTGCCATCTGAACCTACTCAAACTTCATTACCTGCAAACAAGACACTGGTTCCCTGTTATTTTTTCTTCAATGGATTCTGCAACAAAGGTGACAGATGCTCATTTTTGCATGGGCCTGATGATAGCATTTTTAATATAAAACCGGTGAAGAATGAGAATGGAAGCACTGATGCACTCAACCTAGAAAATAAAGCACCATCTGGAAATAGAACAGGTGTAACGTCAACACCAACTGATCGATCTGTAGCTGCACCAAAGAATTTGTCTGATCTTAAACATCAGCCTAAGGAAGATCATCAGCTGGAATTACCCAAAAATGTTAAGCAGCAAGGTGATTACCTAGAGTTATCTGCTTCAGAATATAAAGAAGCTGCTGTGAGTAGGTCAGACTCTTCAATTCCAGATGATGGCTTTGTTCATAATGTACCTCATTTATGCACTGGGCAGAGCTCAGAGGAGCAAGTAAATAGTCACATAGAGCCCGAGGAGTGGTGGGAATCATCCCCTCATTCCCCTGGATTTGATGTTCTTGTTCATGATGAAGTGGAGAACTTGGGTTATGAGGAAGATTCTGAATATTTACCAGTGGTTGATAGGGATGAGCAAGAGCTGAATGACCAGTACTTCAGGTATGAATTTATAGATCCAGTTGAGTATGATACTATTTGCCCGGAAGCTGATATTCTGTATGAACAAGAAACATATGATGGTTACAGATGTTTAGATAGAGATCTCATTCATGTTAATGGAAGAACAGTTCATGCTTATGCCACAGATGCATTCTTAGATCCTATATTGTCCAGGAAAAGGATTCGGACATCAGCTGAGATGGCTGCTTATGACAAGAATTTAGATCTTCGTGACCATCTGAGGAGACGTAGAGAAGTTAATGGTCCTCCTGTTACAGGTTTCTTAAGAAGACAAGAATCATCTCCTTTGATGGTTCAAAACCAGGAAAGGCATCTGAGGCATGGCATTGAGCAGCGGCCAAGTAGAAGACTGACATCACAACTGGGATATAGTGCTATAGATTCAACTGGAGAGGTTGAAACTCTGTCAATTGGTAACAAGCGCAGGTTATTCAGGCAGTCCCAGGCCCAGCAACATAGACCAAGGAAGAATTATATAGAAAAACTACCAAAACGGCAGTTTGTTTCATCTAAAATATCCAGGAAACCAGTTTTTAAACAAAGGGGACTTATTCACGAGTCTTCTACATTTTCAGGACCTAAGACTCTTGCAGAAATTAAAGAAGAGAAGATGAAGAAGAATGCTGAAGGAAGTTTACATTGGAAAAGCACATCAACTGATTTTCAGGATCCCAAACCTCTGAGTGAAATTCTCAAGGTCAAAAGGACCATGGATCAGTGA 1581 0.4194 MDEDSLKRYTDCVYFLASPLTCKKGAECEYRHNEIARLNPRDCWYWLSGQCLNPTCAFRHPPLDGHTGAPVPSEPTQTSLPANKTLVPCYFFFNGFCNKGDRCSFLHGPDDSIFNIKPVKNENGSTDALNLENKAPSGNRTGVTSTPTDRSVAAPKNLSDLKHQPKEDHQLELPKNVKQQGDYLELSASEYKEAAVSRSDSSIPDDGFVHNVPHLCTGQSSEEQVNSHIEPEEWWESSPHSPGFDVLVHDEVENLGYEEDSEYLPVVDRDEQELNDQYFRYEFIDPVEYDTICPEADILYEQETYDGYRCLDRDLIHVNGRTVHAYATDAFLDPILSRKRIRTSAEMAAYDKNLDLRDHLRRRREVNGPPVTGFLRRQESSPLMVQNQERHLRHGIEQRPSRRLTSQLGYSAIDSTGEVETLSIGNKRRLFRQSQAQQHRPRKNYIEKLPKRQFVSSKISRKPVFKQRGLIHESSTFSGPKTLAEIKEEKMKKNAEGSLHWKSTSTDFQDPKPLSEILKVKRTMDQ* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0980 526 Gene3D - 75 139 - -
Gso17g0980 526 Gene3D - 2 63 - -
Gso17g0980 526 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Gso17g0980 526 Pfam Zinc-finger containing family 7 63 IPR041686 -
Gso17g0980 526 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Gso17g0980 526 MobiDBLite consensus disorder prediction 494 513 - -
Gso17g0980 526 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Gso17g0980 526 SMART c3hfinal6 6 34 IPR000571 GO:0046872
Gso17g0980 526 SMART c3hfinal6 84 109 IPR000571 GO:0046872
Gso17g0980 526 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 87 109 IPR000571 GO:0046872
Gso17g0980 526 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Gso17g0980 526 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 525 - -
Gso17g0980 526 SUPERFAMILY CCCH zinc finger 83 108 IPR036855 GO:0046872
Gso17g0980 526 MobiDBLite consensus disorder prediction 124 153 - -
Gso17g0980 526 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32-LIKE 1 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0980 Gso-Chr17 9199627 9202501 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso17g0980 zf-CCCH_3 5.2e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0980 - - gmx:100792282 1070.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0980 17 9199627 9202501 Gso17g0980 17 9199627 9202501 ECH