Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso17g0975 | ATGCTGTGGTCTTATGCCTCGCACTATGTCCCTCCACAACACCGCACTAACAGCTTCCAAACCTTAACCGATGATTCAACCAGCCGTGGTGGCGCTAGACCACGTGACGGTGGCCGCGGTGGTTCCGGCAGCCGTGGGTTTTCTCGTCCCCGCATTCCTTCTAACCGGTTACCCGTGGAGGAACCACAAGACGGCAGCGACGCTATTAACTTCGACGCGTACGAGTCGGTACCGGTGGAGGCGAGTGGGAAGGACGTGCCACCGCCGGTGAACACCTTCAATGAAGCGGACTTGGACGAAGGTTTAAAGAGGAACATCGACCGATGCAAGTATGTGAAACCCACGCCGGTTCAGCGCCACGCGATTCCCATCGCGAGTGCGGGACGCGACCTAATGGCGTGCGCACAGACCGGTTCGGGCAAAACGGCAGCGTTTTGTTTTCCCATTATATCTGGGATTTTGAAGGGTCGTTCTCTTTCTGGGTTTTCATCAATGCCGGCTCGTGGTGCCGCTGTTGCATACCCCACTGCACTTATTCTGTCTCCTACCAGGGAGTTATCATGCCAGATACGCGATGAAGCGAATAAATATGCGCATCAAACTGGAGTGAAGGTTGTTGTTGCCTACGGTGGGGCTCCTATTACTCAGCAGCTGCGCCTTATGGAGAAAGGTGTTGATATATTGGTTGCAACTCCTGGGCGTTTGGTGGATATTATTGAAAGAGAAAGGGTTTCGTTGACAAAGATAAAGTATCTTGCTTTGGATGAGGCTGATCGTATGTTGGACATGGGTTTTGAACACCAAATACGCAAGATTGTGGAGCAAATGCAGATGCCCTCGCCAGGTATTAGGCAAACATTGTTGTTTAGTGCCACGTTTCCTAATGATATACAGAAGCTAGCATCGGACTTTTTATCCAACTACATATTCCTGTCTGTTGGAAGGGTTGGATCGAGTACTGAACTGATTGTGCAGAAGATTGAGCTTGTACAGGATATGGACAAAAGGGACCATCTTATTAATCATCTGCGACGTCAAAAGGTGCATGGGGCAAATGGGAAGCATGCTTTGACTCTTGTATTTGTTGAAACCAAAAGAGGAGCGGATGTTTTAGAAGGTTGGTTGTTGAGAAGTGGCTTTTCAGCTGTTGCCATACATGGTGACAAAGTTCAAATGGAAAGGGAACGGGCTTTAAGATCATTCAAATCTGGTTTGACTCCCATTTTGGTTGCAACTGATGTTGCTTCACGGGGATTGGATATCCCGCATGTGGCTCATGTTATAAACTTTGACTTGCCTAGAGACATTGATAACTACGTACATAGAATTGGAAGAACAGGCCGTGCAGGCAAATCTGGGTTAGCCACTGCCTTCTTCAGCGACAAGAATAGCCCTATTGCAAAGGCTCTTATTGGACTCTTGCAGGAAGCAAACCAAGAAGTTCCATCTTGGCTCAACCAATATGCTACTGAGGGTTCATCATCTGGTGGGGGTGGTCGTGGCTATGAAGCTCAGCGTTACCGCAGTGGCAGTTATGGTGGTCATGATTTCCGGAATGTCACTGAACCTGAGGTGCAGAATTACAACTGCTACAATACCAATGGCAATGCAGTTCAGTTTGTAGAGTCTTACACTGCTGATGATGCCTCTTACGTTGATACCTCCTATGACATCCAAAACTCCAATATAGATTGCTCTTTTGAATGTTTACATATAGCTTCTTCCGGCAGTTATAATCACACTGATTCTTGTGAGTTGAATGGAGGTGGTGGTAGGGTTGAAGAAGATGGGCCACGCGGTTATGCATCTATTGTTGCCACTGGATGGGATTAG | 1833 | 0.479 | MLWSYASHYVPPQHRTNSFQTLTDDSTSRGGARPRDGGRGGSGSRGFSRPRIPSNRLPVEEPQDGSDAINFDAYESVPVEASGKDVPPPVNTFNEADLDEGLKRNIDRCKYVKPTPVQRHAIPIASAGRDLMACAQTGSGKTAAFCFPIISGILKGRSLSGFSSMPARGAAVAYPTALILSPTRELSCQIRDEANKYAHQTGVKVVVAYGGAPITQQLRLMEKGVDILVATPGRLVDIIERERVSLTKIKYLALDEADRMLDMGFEHQIRKIVEQMQMPSPGIRQTLLFSATFPNDIQKLASDFLSNYIFLSVGRVGSSTELIVQKIELVQDMDKRDHLINHLRRQKVHGANGKHALTLVFVETKRGADVLEGWLLRSGFSAVAIHGDKVQMERERALRSFKSGLTPILVATDVASRGLDIPHVAHVINFDLPRDIDNYVHRIGRTGRAGKSGLATAFFSDKNSPIAKALIGLLQEANQEVPSWLNQYATEGSSSGGGGRGYEAQRYRSGSYGGHDFRNVTEPEVQNYNCYNTNGNAVQFVESYTADDASYVDTSYDIQNSNIDCSFECLHIASSGSYNHTDSCELNGGGGRVEEDGPRGYASIVATGWD* | 611 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso17g0975 | 610 | SMART | ultradead3 | 110 | 326 | IPR014001 | - | |
Gso17g0975 | 610 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 176 | 465 | IPR027417 | - | |
Gso17g0975 | 610 | MobiDBLite | consensus disorder prediction | 12 | 28 | - | - | |
Gso17g0975 | 610 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 25 | 531 | - | - | |
Gso17g0975 | 610 | Pfam | Helicase conserved C-terminal domain | 336 | 450 | IPR001650 | - | |
Gso17g0975 | 610 | Gene3D | - | 313 | 493 | IPR027417 | - | |
Gso17g0975 | 610 | SMART | helicmild6 | 369 | 450 | IPR001650 | - | |
Gso17g0975 | 610 | CDD | SF2_C_DEAD | 323 | 459 | - | - | |
Gso17g0975 | 610 | Gene3D | - | 55 | 312 | IPR027417 | - | |
Gso17g0975 | 610 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 335 | 489 | IPR001650 | - | |
Gso17g0975 | 610 | MobiDBLite | consensus disorder prediction | 12 | 67 | - | - | |
Gso17g0975 | 610 | CDD | DEADc_DDX3_DDX4 | 92 | 317 | IPR044763 | GO:0003724|GO:0005524 | |
Gso17g0975 | 610 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 122 | 311 | IPR014001 | - | |
Gso17g0975 | 610 | Pfam | DEAD/DEAH box helicase | 115 | 300 | IPR011545 | GO:0003676|GO:0005524 | |
Gso17g0975 | 610 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 91 | 119 | IPR014014 | GO:0003724 | |
Gso17g0975 | 610 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 37-LIKE ISOFORM X1 | 25 | 531 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso17g0975 | Gso-Chr17 | 9166013 | 9169101 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso17g0975 | 91 | 483 | Eukaryotic Initiation Factors Gene Family | AT1G72730 | 31.980 | 5.70e-57 | 196 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso17g0975 | K11594 | - | gmx:100791226 | 1177.93 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso17g0975 | 17 | 9166013 | 9169101 | Gso17g0975 | 17 | 9166013 | 9169101 | ECH |