Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0965 ATGGTGCAATCAAAGAAGTTCAGAGGTGTCAGGCAACGCCATTGGGGTTCATGGGTATCCGAAATTCGCCACCCGCTTCTGAAGAGAAGGGTGTGGCTAGGGACATTTGAAACAGCAGAAGAAGCTGCTAGAGCCTATGATCAAGCTGCGATTCTGATGAGTGGGAGAAATGCCAAGACCAATTTCCCAATAACTCAAACTCCAGAAGGTGATCCAAAGAGCACTACCAGTGAGGACACTCCCTCCACCACCTCGAAGGATCTGGAGGAAATCTTACATGCAAAGCTTCGAAAATGTGGGAAGGTACCTTCACCTTCTATGACTTGTTTGAGGCTTGACCCGGAGAACTCCCACATCGGAGTGTGGCAAAAACGTGCTGGGAGGCGTTCTGATTCAAATTGGGTCATGACGGTTCAACTGGGAAAGAAGAGTGTTAATGTTAATAATAATGACACTCATCATCAAGCTGATAGTAGCAGTAGTAGTTCTCTTTCTTCTTCTCTACCTTCTTCTGAACATCACCACATTGAGTCTCCATCACTGGCTGTGACAGGTAATCTTCATCATCAAGAAGTTGTGAGAGGAGAGATTGACGAAGAGGAGAGAATTGCCCTTCAGATGATTGAGGAACTCCTCAACGACAGAAACTGCCCTAGCCCATCATTTAACAACAACATTCAAGAAAGGGATGGTGCTGATCATGACCACTTTTTTCTTTAA 720 0.4542 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGDPKSTTSEDTPSTTSKDLEEILHAKLRKCGKVPSPSMTCLRLDPENSHIGVWQKRAGRRSDSNWVMTVQLGKKSVNVNNNDTHHQADSSSSSSLSSSLPSSEHHHIESPSLAVTGNLHHQEVVRGEIDEEERIALQMIEELLNDRNCPSPSFNNNIQERDGADHDHFFL* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0965 239 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Gso17g0965 239 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Gso17g0965 239 MobiDBLite consensus disorder prediction 145 174 - -
Gso17g0965 239 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Gso17g0965 239 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Gso17g0965 239 MobiDBLite consensus disorder prediction 145 184 - -
Gso17g0965 239 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Gso17g0965 239 CDD AP2 5 65 IPR001471 GO:0003700|GO:0006355
Gso17g0965 239 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Gso17g0965 239 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 1 224 - -
Gso17g0965 239 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 224 - -
Gso17g0965 239 MobiDBLite consensus disorder prediction 214 239 - -
Gso17g0965 239 MobiDBLite consensus disorder prediction 60 82 - -
Gso17g0965 239 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Gso17g0965 239 MobiDBLite consensus disorder prediction 60 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0965 Gso-Chr17 9079961 9081499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0965 1 213 AP2-EREBP Transcription Factor Family AT1G15360 59.817 1.94e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso17g0965 AP2 1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0965 - - gmx:100787517 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0965 17 9079961 9081499 Gso17g0965 17 9079961 9081499 ECH
Gso17g0965 17 9079961 9081499 Gso4g1221 4 28443679 28446517 PCT
Gso4g1221 4 28443679 28446517 Gso17g0965 17 9079961 9081499 PCT