Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0950 ATGGGAAGGAAAAAGACAGAGGATGCTGGCCCATCTGCGAAGGTAAAGGCTGGTAGCAAAGATCCTCCTAAGAAGGAAAAAATTTCTGTGTCTGCCATGCTGGCCAGTATGGATGAAAAGCCTGATAAACCTAAAAAGGTCCCTTCTTCCTCCAGTAAGCCGAAGCCGAAATCTGCTCCAAAAGCTTCCACATACACCGACGGAATTGATCTTCCTCCATCCGACGATGAAGATGATGATGATCTCTTGGAAGAGGGGGAAGCCAAAAGGTCCAGTCAGCAGCAGCAAAGGGTTGATTTGAAGCCACTTGATGTGCCTATTGCTGATAAAGAGTTGAAAAAGCGCGAAAAGAAGGATCTTTTAGCCGCACATGCTGCTGAGCAGGCAAAGAAGGAGGCTCTTAGGGATGACCACGATGCTTTCACTGTGGTCATTGGAAGCCGGGCTTCGGTGCTTGATGGAGGAGATGATGCTGATGCTAATGTCAAAGATATAACAGTAGAAAATTTCTCCGTGTCTGCACGGGGTAAAGAACTTCTGAAAAATGCAACAGTGAAGATATCTCACGGGAAGAGGTATGGTTTGGTTGGGCCCAATGGAAAAGGAAAGTCCACGCTGTTGAAACTTCTTGCTTGGAGGAAGATACCGGTACCTAAGAATATCGATGTCCTTCTGGTTGAGCAGGAGGTAGTTGGTGATGATAAAACAGCTCTTGAAGCTGTTGTTTCAGCTAATGACGAACTTGTTAAAATTCGACAAGAAGTTGCATCTCTGCAGAATGCAGCTTCTGTTGAAGACAAAGATAATGATGAGGAAGACGAGACAGGAGAGAAGCTAGCAGAGCTATATGAAAAACTACAGCTGATGGGATCTGATGCTGCTGAAGCTCAAGCATCAAAGATATTAGCTGGTTTAGGTTTTACAAAGGACATGCAAGCCCGTCCTACAAAATCCTTTAGTGGTGGCTGGAGGATGAGAATTTCTTTAGCTCGAGCACTTTTTGTGCAACCAACTCTATTATTGCTTGATGAACCCACAAATCATCTTGACCTGAGGGCTGTTCTCTGGTTGGAAGAGTATTTGTGCCGTTGGAAGAAAACTCTGGTGGTTGTCTCACATGATAGGGATTTTCTCAATACAGTGTGTACTGAGATTATTCATCTCCATGATTTGAAACTTCATTTCTATCGTGGAAATTTTGATGATTTTGAGAGCGGGTACGAACAGCGTCGTAAAGAGATGAATAAGAAGTATGATATTTATGCCAAGCAATTGCAAGCTGCTAAAAGAAGTGGAAACCAGGCTCAGCAAAAAAAGGTTAAGGATCAAGCAAAGTTTGCAGCAGCTAAGGAAAAAAGCAAGGGAAAGGGCAAGGGCAAGGTTGACGAGGATGAGGCCCCACCAGAGGCACCTCAGAAGTGGAGGGATTACAGCGTGGAATTTCACTTTCCGGAACCTACTGAGCTCACACCCCCACTTCTGCAGCTTATTGAAGTCAGCTTTAGCTACCCAAACCGGGAGGATTTCAGGCTCTCAAATGTTGATGTTGGAATTGATATGGGGACTCGTGTTGCGATTGTTGGGCCTAATGGAGCTGGAAAATCTACATTGCTGAATCTTCTAGCTGGTGATTTGGTTCCTTCCGAGGGTGAAATTCGAAGGAGTCAGAAGTTGAGGATAGGAAGATATTCCCAACACTTTGTGGACCTTCTAACAATGGATGAAACAGCTGTGCAGTATCTTCTGCGTCTCCATCCAGATCAGGAGGGACTTAGCAAGCAGGAGGCTGTCCGTGCAAAACTTGGTAAGTTTGGGCTACCAAGTCATAACCATCTTACTCCTATTGCCAAACTATCAGGAGGGCAGAAAGCTCGGGTGGTCTTCACATCTATCTCCATGTCAAATCCACACATTTTATTGTTAGATGAACCCACCAATCATCTGGACATGCAAAGTATTGATGCATTGGCCGATGCACTGGATGAATTCACCGGTGGAGTTGTTCTTGTTAGTCATGATTCAAGATTGATATCACGTGTATGTGAGGATGAAGAAAGGAGTCAAATCTGGGTTGTCGAAGAGGGCACTGTCAAAAATTTCCCAGGAACATTTGAGGATTACAAGGACGACTTGCTGAGAGAGATTAAAGCTGAAGTTGATGATTGA 2166 0.4455 MGRKKTEDAGPSAKVKAGSKDPPKKEKISVSAMLASMDEKPDKPKKVPSSSSKPKPKSAPKASTYTDGIDLPPSDDEDDDDLLEEGEAKRSSQQQQRVDLKPLDVPIADKELKKREKKDLLAAHAAEQAKKEALRDDHDAFTVVIGSRASVLDGGDDADANVKDITVENFSVSARGKELLKNATVKISHGKRYGLVGPNGKGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANDELVKIRQEVASLQNAASVEDKDNDEEDETGEKLAELYEKLQLMGSDAAEAQASKILAGLGFTKDMQARPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDLKLHFYRGNFDDFESGYEQRRKEMNKKYDIYAKQLQAAKRSGNQAQQKKVKDQAKFAAAKEKSKGKGKGKVDEDEAPPEAPQKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPSEGEIRRSQKLRIGRYSQHFVDLLTMDETAVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSNPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEERSQIWVVEEGTVKNFPGTFEDYKDDLLREIKAEVDD* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0950 721 MobiDBLite consensus disorder prediction 1 104 - -
Gso17g0950 721 ProSitePatterns ABC transporters family signature. 319 333 IPR017871 GO:0005524
Gso17g0950 721 Coils Coil 411 431 - -
Gso17g0950 721 CDD ABCF_EF-3 494 696 - -
Gso17g0950 721 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 494 719 IPR003439 GO:0005524
Gso17g0950 721 PANTHER - 5 721 - -
Gso17g0950 721 Gene3D - 162 454 IPR027417 -
Gso17g0950 721 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 473 706 IPR027417 -
Gso17g0950 721 MobiDBLite consensus disorder prediction 443 473 - -
Gso17g0950 721 SMART AAA_5 520 696 IPR003593 -
Gso17g0950 721 SMART AAA_5 189 391 IPR003593 -
Gso17g0950 721 Coils Coil 241 261 - -
Gso17g0950 721 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 399 IPR027417 -
Gso17g0950 721 Pfam ABC transporter 511 646 IPR003439 GO:0005524
Gso17g0950 721 Pfam ABC transporter 180 347 IPR003439 GO:0005524
Gso17g0950 721 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 5 721 - -
Gso17g0950 721 CDD ABCF_EF-3 165 392 - -
Gso17g0950 721 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 165 422 IPR003439 GO:0005524
Gso17g0950 721 Gene3D - 459 720 IPR027417 -
Gso17g0950 721 MobiDBLite consensus disorder prediction 429 473 - -
Gso17g0950 721 Coils Coil 117 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0950 Gso-Chr17 8913951 8916904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0950 493 697 Calmodulin-binding Proteins AT2G36910 29.004 8.48e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0950 K06184 - gmx:100806226 1278.85