Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0945 ATGAATATGAAAGTTGTTGTTGTGAGCATGGAGAACGAGAAGAAGAAGTGCGGTTGCTGGGCTGTCCTCAAACGCGGCGTTAGAGGTGCGTGCAAACCTTCTTCAGCTTCCAGAGACTCTCCTAACACTATCCCTCGTACTAGTCTCGTTTATGATGCAGCAACCGAGACAAGATACTTGAATGCTAGCAATAGAGAACTATGCCCTCCAAATGAAGCTCGATTATCTTCTGATAATCCTGATCCCCCATCTCAGGAGAATAAGGTTCCTTGCCAGCTCCTTCAATTTACATTTCAAGAACTAAAGGCTGCAACTGGGAATTTCAGACCCGATAGCATTCTTGGGGAGGGTGGCTTTGGTTATGTTTTCAAAGGTTGGATTGAGGAAGATGGAACGGCACCGGCGAAACCTGGGTCAGGGATTACAGTGGCTGTCAAAAGCTTGAAGCCAGATGGCCTTCAGGGCCATAGAGAATGGGTGGCTGAAGTTGACTTTCTTGGACAGCTTCACCATCCTAACCTTGTGAAACTTATTGGTTACTGCATTGAAGATGATCAGAGGCTTCTTGTTTACGAGTTTATGACCCGTGGAAGTCTAGAAAATCATCTATTCAGAAGAACTGTACCTCTTCCGTGGTCCAACAGGATTAAGATTGCCCTTGGTGCAGCAAAAGGATTGGCCTTCCTCCATAATGGTCCCGAACCAGTCATTTATAGAGATTTTAAAACATCTAACATCTTGCTTGATACGGAGTATAATGCGAAGCTTTCAGATTTTGGTCTTGCAAAAGCAGGGCCTCAAGGAGACAAAACACATGTTTCTACCAGGGTAGTTGGAACTTATGGTTATGCTGCTCCAGAATATGTCATGACAGGACACTTGACAGCTAAAAGTGATGTTTATAGCTTTGGAGTTGTGTTACTTGAGATATTAACAGGAAGAAGATCAATGGACAAGAAGCGCCCGAGTGGGGAACAAAATCTTGTTACATGGGCTAGGCCATACTTAGCTGACAAGCGAAAACTGTTCCAACTCGTGGATCCTCGCCTTGAACTAAATTATTCTCTAAAAGGAGTGCAGAAGATTTCCCAGTTAGCTTATAATTGCCTTACTAGAGACCCCAAATCCCGTCCTAACGTGGATGAAGTTGTGAAGGCTCTGACTCCATTGCAGGATCTTAATGACCTTGCAATCTTGTCTTATCACTCTCGCTTGTCTCAACAAGGTAGACGGAAGAAGAAAGATGGAACTCCACAGTTCACATACACACAATCCAAGAGCATGAGGGCTTCTCCCTTGAATACCGGCAAGCAGCGTCAATGA 1323 0.4452 MNMKVVVVSMENEKKKCGCWAVLKRGVRGACKPSSASRDSPNTIPRTSLVYDAATETRYLNASNRELCPPNEARLSSDNPDPPSQENKVPCQLLQFTFQELKAATGNFRPDSILGEGGFGYVFKGWIEEDGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTVPLPWSNRIKIALGAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTAKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVTWARPYLADKRKLFQLVDPRLELNYSLKGVQKISQLAYNCLTRDPKSRPNVDEVVKALTPLQDLNDLAILSYHSRLSQQGRRKKKDGTPQFTYTQSKSMRASPLNTGKQRQ* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0945 440 Gene3D Transferase(Phosphotransferase) domain 1 194 404 - -
Gso17g0945 440 ProSitePatterns Protein kinases ATP-binding region signature. 114 146 IPR017441 GO:0005524
Gso17g0945 440 Gene3D Phosphorylase Kinase; domain 1 84 193 - -
Gso17g0945 440 PANTHER OS01G0588500 PROTEIN 78 409 - -
Gso17g0945 440 MobiDBLite consensus disorder prediction 68 87 - -
Gso17g0945 440 Pfam Protein tyrosine and serine/threonine kinase 112 387 IPR001245 GO:0004672|GO:0006468
Gso17g0945 440 CDD STKc_IRAK 114 390 - -
Gso17g0945 440 PANTHER OS01G0588500 PROTEIN-RELATED 78 409 - -
Gso17g0945 440 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Gso17g0945 440 MobiDBLite consensus disorder prediction 405 440 - -
Gso17g0945 440 SUPERFAMILY Protein kinase-like (PK-like) 90 393 IPR011009 -
Gso17g0945 440 ProSiteProfiles Protein kinase domain profile. 108 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0945 440 MobiDBLite consensus disorder prediction 418 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0945 Gso-Chr17 8838930 8842962 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0945 96 387 Glycoside Hydrolase AT3G07070 56.081 3.31e-110 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso17g0945 PK_Tyr_Ser-Thr 1.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0945 - - gmx:100785385 893.264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0945 17 8838930 8842962 Gso17g0945 17 8838930 8842962 ECH