Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0906 ATGGGAAAGAAAAAGAAGCAAGTAGGAGAAATAGAGGAGGATGGTAAAGTTGGAGATAGCAGCCCCAGAGCATACGATAATGATACTATGGTGTTTATATCCATGTCTCAAGAATTGAAGAATGAGGGGAACAAGCTGTTCCAAAAGAGGGATCTTGAAGGAGCTATACTGAAATATGAAAATGCCCTCAAGTTGCTTCCCAAAAATCATATTGATGTGTCCTATCTGCGGAGCAACATGGCTGCATGTTACATGCAGATGGGACTCAGTGAGTTCCCAAGGGCAATTCATGAATGTGATTTGGCTCTTCAAGTGACACCGAAATATAGTAAAGCTCTGTTGAAGAGGGCAAGGTGCTATGAGGCTTTAAATAGGCCAGATTTAGCTCTGAGGGATGCCAGCACTGTTGTGAAGATGGAGCCAAATAATGTCATGGCATTGGAGATCTCAGAAAAGGTGAAAAGTGCACTTGAGGAGAAAGGATTGAGGGTAAACGATACAATAATTGAGTTGCCTCCAGATTATGTTGAACCTCCTGATGCTTTGCCTCCAGAAAAGGTATCGAAAGAGAAGAGGCGGAAGAAGAAGAAGAGCAATAAAGAGGAAGAGAAGGCTCCTGATGACAAAATTCTAGAAAAGCAAACCGAGGAGAAATTTGAGGAGAAGAAGGCTGAGGGCAGTATTGTAGTCGTAGAGAAGAAGATCAACACGTCCAAGAAGAAGAAGGCCAAGGGAAAAACTAATGAGAAGAAGACTGATATTAAGGAAGTTATAGAGGAAAGAAGTAATGGTAGAAGGAATCATGTTCCTAAGAAATCCGCTAAATTTATTTTTGGTGATGATATAAGATGTGCTGAACTGCCAATTAATTGTAGCCTTTTCCAGTTAAGAGAAGTTATTCAGGACCGATTCCCTAGCCTGGGAGCTGTTCTTGTCAAATACAGGGACCAAGAAGGCGATTTGGTCACAATTACTTCTGATGATGAATTAAGATGGGCTGAAGCAGGATCTAATGGTTCTATCCGACTGTACATAGTAGAAGCTACTCCTGAGCAGGATCCACTTTTTGAGAAATTTAAAGTGAAGGAGGTGGAAGTGGTTGGCGTTAACATCGCACCTGAGAATGGTTGTGTAGGAAAGGCAAAGGAAATTATTAGCTCTTCTTGCATTGAGGATTGGATAATTCAGTTTTCCAAACTGTTCAAGAACCATGTTGGGTTTGAATCTGACAGATATTTGGATTTCCATGAACTTGGGATGAAGCTCTATTCTGAGGCTTTGGAGGAGACGGTTACAAGCGAAGAAGCACAAGGCCTATTTGACATTGCAGGAGATAAGTTCCAAGAGATGACTGCTCTTGCATTGTTCAACTGGGGAAATGTGCATATGTCTAGGGTAAGGAAGAAAGTATATGTCACGGAAGATTCTTCTAAAGAACATCTTTGTGAACAAATCAAAAGTTCATATGAATGCGCACTGGAAGAATATGCAAAAGCGGGAGAAAAATATGCAGCAGCCATTAAAATTAAGTCAGATTTTCATGAAGGCTTCCTGGCACTAGGGCTGCAGCAGTTTGAGCAAGCAAAACTTTCTTGGTATCATGCACTTAGTAGTAATGCAGATTTACTTACATGGCCTTCCACTGAGGTTCTTCATCTTTACAACAATGCTGAAGAAAATATGGAAAAAGGAATGCAGATATGGAAAGAATCAGAAAAGCAGAACTTGAGTAAGACATCTAATTCAAATGATGTTAGATTGCATTTGCAGAACATGGGGTTGGATGGGCTTTTTAAAAATATATCCTTAGATGAACTTGCAGCACAGGAGGCACATATGGGGTCTCAAATAAATCTCCTATGGGGTACCATGCTATATGAACGCTCATTTGTGGAGTTCAAATTAGGGCTACCGATATGGCATGAATCTCTAGAAGTTGCAGTTGAGAAGTTTGAACTTGCAGGAGCTTCTCAAACAGATATAGCTGTAATTTTGAAGAACCACTGTTCAAATAATACTGCGGTAGATGGTCTTGCCTTCAAAATTGATGAAATAGTACAGGCATGGAATGAGATGTACAAAGCTAAAAAGTGGCAGAGTGCAGTTCCATCATTTCGTTTGGAACCCTTATTTAGAAGGCGAGTTTCAAAAACTTATCATGCCTTTGAGCTTGCATGA 2178 0.404 MGKKKKQVGEIEEDGKVGDSSPRAYDNDTMVFISMSQELKNEGNKLFQKRDLEGAILKYENALKLLPKNHIDVSYLRSNMAACYMQMGLSEFPRAIHECDLALQVTPKYSKALLKRARCYEALNRPDLALRDASTVVKMEPNNVMALEISEKVKSALEEKGLRVNDTIIELPPDYVEPPDALPPEKVSKEKRRKKKKSNKEEEKAPDDKILEKQTEEKFEEKKAEGSIVVVEKKINTSKKKKAKGKTNEKKTDIKEVIEERSNGRRNHVPKKSAKFIFGDDIRCAELPINCSLFQLREVIQDRFPSLGAVLVKYRDQEGDLVTITSDDELRWAEAGSNGSIRLYIVEATPEQDPLFEKFKVKEVEVVGVNIAPENGCVGKAKEIISSSCIEDWIIQFSKLFKNHVGFESDRYLDFHELGMKLYSEALEETVTSEEAQGLFDIAGDKFQEMTALALFNWGNVHMSRVRKKVYVTEDSSKEHLCEQIKSSYECALEEYAKAGEKYAAAIKIKSDFHEGFLALGLQQFEQAKLSWYHALSSNADLLTWPSTEVLHLYNNAEENMEKGMQIWKESEKQNLSKTSNSNDVRLHLQNMGLDGLFKNISLDELAAQEAHMGSQINLLWGTMLYERSFVEFKLGLPIWHESLEVAVEKFELAGASQTDIAVILKNHCSNNTAVDGLAFKIDEIVQAWNEMYKAKKWQSAVPSFRLEPLFRRRVSKTYHAFELA* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0906 725 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Gso17g0906 725 PANTHER PROTEIN CLMP1 3 724 IPR044517 -
Gso17g0906 725 SMART tpr_5 74 109 IPR019734 GO:0005515
Gso17g0906 725 SMART tpr_5 110 143 IPR019734 GO:0005515
Gso17g0906 725 SMART tpr_5 36 69 IPR019734 GO:0005515
Gso17g0906 725 CDD PB1 275 345 - -
Gso17g0906 725 MobiDBLite consensus disorder prediction 1 23 - -
Gso17g0906 725 SUPERFAMILY CAD & PB1 domains 273 356 - -
Gso17g0906 725 MobiDBLite consensus disorder prediction 196 213 - -
Gso17g0906 725 Gene3D Tetratricopeptide repeat domain 34 163 IPR011990 GO:0005515
Gso17g0906 725 SMART PB1_new 271 348 IPR000270 GO:0005515
Gso17g0906 725 Pfam PB1 domain 275 346 IPR000270 GO:0005515
Gso17g0906 725 MobiDBLite consensus disorder prediction 173 213 - -
Gso17g0906 725 MobiDBLite consensus disorder prediction 1 21 - -
Gso17g0906 725 ProSiteProfiles PB1 domain profile. 271 348 IPR000270 GO:0005515
Gso17g0906 725 Gene3D - 268 348 - -
Gso17g0906 725 PANTHER PROTEIN PHOX3 3 724 - -
Gso17g0906 725 SUPERFAMILY TPR-like 37 539 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0906 Gso-Chr17 8441392 8446247 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0906 - - gmx:100778972 1349.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0906 17 8441392 8446247 Gso17g0906 17 8441392 8446247 ECH
Gso17g0906 17 8441392 8446247 Gso9g0764 9 12185320 12190790 PCT
Gso9g0764 9 12185320 12190790 Gso17g0906 17 8441392 8446247 PCT