Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0892 ATGGGAAGTACTGAAAAGATCCCAATCAGCGCTGAAAGTTCAGAAACCACCATCGAGATAAAAATTAAAACATTGGATTCTCAAACTTACACCCTCAGAGTGGATAAACAGATGCCAGTCCCTGCTCTGAAAGAACAGATTGCTTCTGTAACTGGAGTGTTATCTGAACGACAACGCTTAATTTGCCAAGGAAAAGTTCTAAAGGATGATCAGCTCCTGTCTGCCTATCATGTTGAAGATGGTCACACCTTGCATCTGGTTGTGAGGCAACCTGATCTACCACCACCAGGAAGTGTGTCCAATCATTCAGTGACTGAACTGAATTCAAGCACAGGCCTTGGTCACGCAAGTCAAGTAGCCCCTGGTGTTTTTATTGAAACTTTCAATGTGCCTGTTCAGGGTGATGGAGTTGCTCCTGAAATCAATAGGATTGTTTCTGCTATTCTAGGATCTATTGGACTTCCAAATTTTGCGAGTGGCAGTGAAGGAGGGATTGATGTCAGGGAGCATGATTCCCAAGGCTCTGGAAGAACTTTGGGTTCTAGTGGAATATTAGATTCATCTCATCCTCGACCCGAACAAGCTGGTTTGCGGATTTTGTCTGATAGATCGCGTAATACCTTTGGAACCCCAGCGCCAGTATCTCTAGGATCTTTGCAGCCTCCTGTCATTCCTGATTCTTTGACAACTTTGTCCCAATACTTAAGGCATATAAGCCTTGAATTTGATGCAATTGTCAGAGAAGGGAGGGATAATGCCGAAGCAGCTGAGGCTCAAAGGAATGAAGAAACTAGATCTGTTTCTTCACATTTGGGTTCAACTCCAGAAGGGCTTTCATCACCCGCATCCTTGGCAGAAGTTTTACGTTCTACCAGACAAATGATTGATCAACAAGCCGGCGAATGCCTACTTCAACTATCAGGGCAGCTGGAGAATCAAGCAAATGTAACGGATCCCTTGTTGCGGTCAAGCATTCAGTCTAGGGCTTTGAGAACTGGAGTTTTGTTTTATAACCTTGGTGCCTTTTTGCTTGAGCTTGGTCGCACAACCATGACACTGCGTTTGGGTCAAACATCGTCTGAAGCTGTAGTTAATGGTGGGCCTGCAGTTTTTATATCCCCAAATGGTCCTAACCATATCATGGTTCAGCCCCTTCCTTTTCAACCTGGGGCAAGCTTTGGTGCTGTCCCTGTGGGAGCTGCACAGTCTAACTCAAGTTTAGGTAGTGGACTTGGTTCAAGCTTTTTCCCAAGGCGTATAGATATACAGATACGTCGAGGTACCTCAACAACCTCATCCAATACCAATCAAGAAGAACGCAATGAGACACAATCTGCCTCAGTACAAAGAAATTCAGGTGAAAGTTCTGTTAATCAGGCAACCTCTAGGCGTCCAGATGCATCCATTGCTGGGGAGCCAGGAGTAAGTGAACAAGGATCTCAACAATCAAGTCAGCATCACACTGTGTTACCGTCGACTCCTGAATCCATATTGCAAAGGCAAAACACAGAAGATTCTGCCAGGAATGGATCCTTATCAACTCCAAGCACAAGGCAAGAGCCTTCAAGTTCTCGTGTTGTAAATATCAATATTCTGGCTGCTAGTGGACCCCAAAACAACCAAGAATCTGAGAGACAAATACCAAGCAGTGTACTTCAGTTTTTAAGGACATTCTTTCCTGGTGGAGAAATTCACGTGGAAGATTCAAGTGTACAAGGAACAACTGCAGGTTCTGCCTTAGATCATGCTGCAACATCAAGGGGTGCTGCCCCAGTTCCTGAAGCACAACCTAATGTCAGTGAAGAAGGAATATTTTTGTCTAATATACTCCGTGAAATCATGCCAGTGATATCTCAACAAGTAGGGTCTGAGGGAAATCCTTCAGAAGATCATATGGCTCAAGATTCTTCAACCCAGGTTGAAACTGATGTCGGGACATCACGCAGACAGAGTGATTCTGATCCAAGCCCCCCAAATGCAAAACGTCAAAAGATGGAGTGA 2001 0.4463 MGSTEKIPISAESSETTIEIKIKTLDSQTYTLRVDKQMPVPALKEQIASVTGVLSERQRLICQGKVLKDDQLLSAYHVEDGHTLHLVVRQPDLPPPGSVSNHSVTELNSSTGLGHASQVAPGVFIETFNVPVQGDGVAPEINRIVSAILGSIGLPNFASGSEGGIDVREHDSQGSGRTLGSSGILDSSHPRPEQAGLRILSDRSRNTFGTPAPVSLGSLQPPVIPDSLTTLSQYLRHISLEFDAIVREGRDNAEAAEAQRNEETRSVSSHLGSTPEGLSSPASLAEVLRSTRQMIDQQAGECLLQLSGQLENQANVTDPLLRSSIQSRALRTGVLFYNLGAFLLELGRTTMTLRLGQTSSEAVVNGGPAVFISPNGPNHIMVQPLPFQPGASFGAVPVGAAQSNSSLGSGLGSSFFPRRIDIQIRRGTSTTSSNTNQEERNETQSASVQRNSGESSVNQATSRRPDASIAGEPGVSEQGSQQSSQHHTVLPSTPESILQRQNTEDSARNGSLSTPSTRQEPSSSRVVNINILAASGPQNNQESERQIPSSVLQFLRTFFPGGEIHVEDSSVQGTTAGSALDHAATSRGAAPVPEAQPNVSEEGIFLSNILREIMPVISQQVGSEGNPSEDHMAQDSSTQVETDVGTSRRQSDSDPSPPNAKRQKME* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0892 666 MobiDBLite consensus disorder prediction 265 281 - -
Gso17g0892 666 MobiDBLite consensus disorder prediction 424 525 - -
Gso17g0892 666 MobiDBLite consensus disorder prediction 253 281 - -
Gso17g0892 666 Gene3D - 10 109 - -
Gso17g0892 666 MobiDBLite consensus disorder prediction 620 666 - -
Gso17g0892 666 MobiDBLite consensus disorder prediction 474 525 - -
Gso17g0892 666 ProSiteProfiles Ubiquitin domain profile. 18 93 IPR000626 GO:0005515
Gso17g0892 666 MobiDBLite consensus disorder prediction 620 658 - -
Gso17g0892 666 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 4 475 - -
Gso17g0892 666 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 476 666 - -
Gso17g0892 666 SUPERFAMILY Ubiquitin-like 13 98 IPR029071 -
Gso17g0892 666 Pfam Ubiquitin family 20 90 IPR000626 GO:0005515
Gso17g0892 666 MobiDBLite consensus disorder prediction 163 192 - -
Gso17g0892 666 MobiDBLite consensus disorder prediction 572 597 - -
Gso17g0892 666 PANTHER SCYTHE PROTEIN UBIQUITIN-LIKE DOMAIN PROTEIN 476 666 - -
Gso17g0892 666 PANTHER SCYTHE PROTEIN UBIQUITIN-LIKE DOMAIN PROTEIN 4 475 - -
Gso17g0892 666 PRINTS Ubiquitin signature 28 48 IPR019956 -
Gso17g0892 666 PRINTS Ubiquitin signature 49 69 IPR019956 -
Gso17g0892 666 PRINTS Ubiquitin signature 70 91 IPR019956 -
Gso17g0892 666 MobiDBLite consensus disorder prediction 174 188 - -
Gso17g0892 666 MobiDBLite consensus disorder prediction 424 465 - -
Gso17g0892 666 SMART ubq_7 18 89 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0892 Gso-Chr17 8328159 8339079 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0892 18 89 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.500 9.41e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0892 K23390 - gmx:100783070 1214.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0892 17 8328159 8339079 Gso17g0892 17 8328159 8339079 ECH