Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0888 ATGGGTTCTTCCTCTAGTCGACTTGGGTCTCGCCCTTCTTCGTCTTCTAGTCACAGTCACAGGGTCAACCGCTTCAGATTATCGTCTCTTCTATGTGGCACCTCCACCTCTCGCTCCGTTCATCAGATGGAAGAACTTTCAGCTGAACTTCGGGTTGATTCAGCAAGGGATTTTGATGGTGAAATTCAGAAAGACACTGAGGAATCGTCTTTATCATATACAGAAGCTAGAATTAGCTCCAGTCGCCCTGCTGAAACTGCAACCCTATCTGATATGAGAACTGAGTTCCATGGGAATACTAGTGTTGAAGGTTCTTCTAGAAACGTTGCAACAAATAGTCAGAGGAACTGCTTGTCTGAACATGAGGAGCTTGTCCCTCCTTATCAGGTAAGTGCTGGTCATACTGGTCATGAATCATATAGTGATAGTAGCAACACAGCTAGTACTTCATTTGTAGAACAGCAGTCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAGGATTTAGTCAATGATGTTAATAATCCAGTGGTTAGTGATGTCTCTCAAGTTTCTCATGAGACAATGCGTCCAAGAAGTTCAACCCCTCAAGAGCATGGGAATTTTGGTTCTGGTGAAATTTCTGTTGAGAATCACACTAGTGCATTCATATCTATTCAGAATTCTTCCAGCCCTGTTGCTCAAGTTTCCAACTTAGCAGCAACCTCTCAATTGCCAGAAGATGAACCTCGTCGTGAGACAATACCTTCGGGTTTAGGTATTCTTGTGTCCAATCGGGAAAGAGGGCCGGGAAATGATAGTGTGCTTCAAGTTGATGTGGTCACTATATCTTCCAACATTTTGTCTGGTAGCAGTGCTGATGCCAATGATAATGATGCCAGAAGGAATGGTAGAAGATTATTTTGGGATGCTTTTTCACGACGTAGTTCTAGAAGGCTTGGTGATTCTCCAACCATTGTCTTCTCTGCTGGGGGTGCTGATGATTCTGGATCTCAAGATCGATGGCTAGTTGATTTTGGTGGTGATTTGTCAAATGATGGGGTTGGAGGTGCTTCCGGATATACGGGTAGTAGAATTCACAGATTGAATGAACGAAGAATGCAACACTCAAGATCTGAGATCTGGGAAAGGCTTCGTGGTGGCTTTGATGAGATTGGTCGGTGGAATTCATGTCCACTAGGACTCCATGCAGATGGCATGTGCTCATGTGAGTCTTCCCCAATGGCTGAGGAATCTAGCACTCAAGCAAGTATTTCAAGAATCATCATGCTGGCTGAGGCTTTGTTTGAGGTTTTAGATGAAATTCATCGACAACCTGGATCACTGTCTCTATCCATGGTATCTCTCCCTGCACCTGAATCAGTTGTTGATTCACTCCCTCTGAAATCTCACAAAAAGGTTGATGTAGCTCATGGAGGCAATGATGCTGAACAATGTTACATATGTCTGGCGGATTATGAAGAAGGGGACCAAATAAGAGTTCTTCCTTGCTTCCACGAGTATCACATGTCATGTGTCGATAAATGGCTTAAAGAAATACATGGTGTATGTCCTCTGTGTCGCGGCAATGTCTGTGGAGGGTTCACAGAGTCTTCTGCCAACTCAGAAGTGCAGTCTCATTGA 1626 0.4391 MGSSSSRLGSRPSSSSSHSHRVNRFRLSSLLCGTSTSRSVHQMEELSAELRVDSARDFDGEIQKDTEESSLSYTEARISSSRPAETATLSDMRTEFHGNTSVEGSSRNVATNSQRNCLSEHEELVPPYQVSAGHTGHESYSDSSNTASTSFVEQQSSDPVSVNVSANKDLVNDVNNPVVSDVSQVSHETMRPRSSTPQEHGNFGSGEISVENHTSAFISIQNSSSPVAQVSNLAATSQLPEDEPRRETIPSGLGILVSNRERGPGNDSVLQVDVVTISSNILSGSSADANDNDARRNGRRLFWDAFSRRSSRRLGDSPTIVFSAGGADDSGSQDRWLVDFGGDLSNDGVGGASGYTGSRIHRLNERRMQHSRSEIWERLRGGFDEIGRWNSCPLGLHADGMCSCESSPMAEESSTQASISRIIMLAEALFEVLDEIHRQPGSLSLSMVSLPAPESVVDSLPLKSHKKVDVAHGGNDAEQCYICLADYEEGDQIRVLPCFHEYHMSCVDKWLKEIHGVCPLCRGNVCGGFTESSANSEVQSH* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0888 541 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 539 - -
Gso17g0888 541 Pfam Ring finger domain 479 522 IPR001841 -
Gso17g0888 541 MobiDBLite consensus disorder prediction 134 159 - -
Gso17g0888 541 MobiDBLite consensus disorder prediction 72 86 - -
Gso17g0888 541 ProSiteProfiles Zinc finger RING-type profile. 480 522 IPR001841 -
Gso17g0888 541 MobiDBLite consensus disorder prediction 184 208 - -
Gso17g0888 541 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 539 - -
Gso17g0888 541 MobiDBLite consensus disorder prediction 61 86 - -
Gso17g0888 541 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 444 526 IPR013083 -
Gso17g0888 541 SUPERFAMILY RING/U-box 474 525 - -
Gso17g0888 541 SMART ring_2 480 521 IPR001841 -
Gso17g0888 541 MobiDBLite consensus disorder prediction 1 22 - -
Gso17g0888 541 CDD RING-H2_PA-TM-RING 479 522 - -
Gso17g0888 541 MobiDBLite consensus disorder prediction 130 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0888 Gso-Chr17 8293401 8297485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0888 355 526 C3H Transcription Factor Family AT5G45290 46.875 7.38e-41 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0888 - - gmx:100783604 1018.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0888 17 8293401 8297485 Gso17g0888 17 8293401 8297485 ECH