Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0884 ATGGCGTTTGATCAAAATTCCATTCCGTTGAACGCGGCCTCGGCGGTGGCCGAGGAGCCGCTGATTTCTCCGGCCACCGTCACGCCGCCCACTCCGAATTCCGTCGGGGAGCTTTTCTACCCGCCCTCGGACTCCGCAACGTGGTGCGTCCACCCCATTGCGCATCATGCCGACGTCAGCCCCGCGGCGGCGCCGTTTGGGTCTAACTACGGCGGTTCCAGTTTCGGAAACCACCGCGTTGTGGCTGCTGGGAATGCTTTGAATTTGGGAAAGTTGTCAGCGTGTAATGGATTAGACAACAAGGCATGCAATGATGTGAATGGTTTTGGTGGTGTTAGGGGAAGCAGAGTGGTTGCAAATGTCGGTGATCACGGCGGCGGTAGCCACCACGAGGGAGGTGGCAGCAACGGCGGCGATGATTCGGCCTCCTCGGGGAGGAAGGTAAAGTTTCTGTGCAGTTTTGGCGGGAAGATATTGCCTAGGCCTAGTGATGGAATGTTGAGATATGTTGGGGGGCAAACAAGGATCATTAGTGTCAGGAGAGATGTGAGTTTCAATGATTTGGTGCAAAAAATGGTTGAGTCTTATGGTCAGGCTGTGGTCATCAAGTATCAGCTTCCTGAGGAGGATCTTGATACATTGGTTTCCGTGTCGTGCCACGATGATGTGGACAACATGATGGAGGAGTACGAGAAATTGGTTGAGAGGTCTCATGATGGTTCTGCCAAGTTGAGGGTTTTTCTGTTTTCTGCTTCCGAGAGTAGTGAATGTTCTTCTTCTTCTGGTGGGGTGCACTTTGGGGACTTGCAGGATACAGGACAGAAGTATTTTGATGCTGTGAATGGGATTGGTAATAGTACAGAGGGGATCAATAGGAAGGAGAGTGTTACAAGTGCTGCTTCAACCCAGAATTCCGATTTTAGTGGTGCTGAAACTCTTGATAGTTCAATTGTCAGTGGTGGGGTGCCCTTGTCATCACCTAAGGAGAATGTGTCAGCAGCTTCTTCTTCCGACACAACTGCAACAAATTTGGTGGTTTTGGAGGTCCCCGGTGCACCGGTTTACTCGGGTGGTGCTTCCGCGGTTTCATTGGCCATGCCTGTGGCTAAGACTAAGACTAGTCCAACCGCAACCCACAATCTTTATTTTCAGAATGAGGTAGAGTCAGAGAAGTCTGTGACTGTTACTTTATCCCAGAACCCATTTGGATTGCAGCCTTTTGTTGATGCTACTAGCCAGGAGGTTATGAATCATGCAGCAGATTATGTCCAGCTGCCTTCACAGATGGGCTTCACAAACCCTCAGCTTTTAGGAAAGACCGGCGGGCATGTCTTCGCGCAACAGCAGTTTCATGATAGTACTCACCGTTTAGCATTGCATCATCAGGTCATCCCTGCTGGGGTACAAATGACAGTGGCTCAACAACCATCTTCTCATGTTGGTGTAAGACCAAATGTTGTTCAACCGCAGCAGCAACATCTTTTGGATCAATACCATGATGAAAATACTTCAGGAGGGGTAAGGATTATCCAGCTTCCTGCTGAACGTAGCTACAACACATTCCAGGTTCCAATGAATCAAGTCCAACCCGTCATAGTTGGAGGCAATTATGGCTGGGTTCAGGTTCCTCCACAAGAGCGTGTTGTTATCTCTGATGGATTGTTACCTCAACAACAGGTAATGATCCCTGAGAAAATCCGAAGAGCTGAGGACTGTTCTATGTGTCAGAAAAAACTACCTCATGCACATTCAGATCCAGTAGTTCAGGATCAGCACGATAGTCGTGGTGCAGGTTCTACTCCTGATTCAACCCCAAGTCACAATAGTTTCCCAATAGAGGACAATGTAAAAGCTCAAGCAACGAATAGGATTATGCCAATGGTGACTTCACCCTTGAAGGAAGGCATTGCTGAACAGGGGGCTAGGACCAGACCCAGGGTCCTTGGCAAATTGGAACCTCCTGATGGAGTACATCATACTGAGACCAGTGGGTTTCCTCATAATATTGAGCCACACACTGAAGGTGGGAGGAATTTTATACAAAAGCTAGAAGAATGGGATCATCCCAGGAACTCGTTTTTCCAGGAAAAGATTGGAATGAAAGGCAGAGAACAATCTCCAAACGACGAGCCCCTGGGAACAACACCATTGTCTTATCTAGATGATGTTGGCAACCACCACTTGGTATCAGTTGAGAACTGGGTTAAACAGGATGTGCTTAATCATATACCTTTAGGTGAAGGAAAATCTATAAAAACTTCAGAGGGTATGCTTCAAGGATCTCAAAAGGAATATACTAATGAGCTTTCCAGGGTTGTTTCTAAATCAGATGCGATAGATAATTGGATTAGACAAGACCATCTAAAACCTGTTGATGCAAGGATGGACACCTTAAAGATAACCAATTCTGAAGTTTATGTAAGTAATGATTACTCTTTTCTGCCAGTTGATAAACCCAGTGGGAATGATAACTTAGATTACAGCACTCACCACTCTGTAGAGGAAGAGGTGATTCTGGATAACAACTTTGGCAGGTCTAAACTGAGAGTTGATGTAAATCAAAATAAGATGACAGGTGTGCTGCCTTGTTCTTCTATGGAAATTTCATACAGGAACAATTCCAGGCCAGGGGAATGCAATGAGGCCGCACAACCTCCATTTTGGGGCATTCCTGGCTCAAGTCCTCAATCGAATATTGGCAACCCCCACAAGGGTGATGCATCACCATCTTCACCATCCTTGTCTCTTAGGTTTGGAGATGTGCAGGATACTAGGAACTCACTTTTCAGCAATCAGGATCCCTGGAATATACAGCATGGGTCAGCAGAAGACCAACAACTTCAAGCTGTTGCGGAAAATGTAGCAGCTTCTGTTTTGCACTCAAGAACTCCTTCAAATTCTGACTTGCATTCCGGAGATGTTTCCTGTTGCGAAACCATTAAGTATGACAGTGTTCAAAACAATCTAATAGATGTCAAGTGTGGACATAAAGCTCAGGATGTCAAGAGCAAGCAACTGGAAAAGGCAAATTTTGGCTTTCCAGCATCAGGTGTTGGAAAACTACAGGTTATAAAGAATTGTGATCTAGAAGAACTGATAGAACTAGGTTCTGGTACCTTTGGGACCGTATATCATGGAAAATGGAGGGGCACCGATGTTGCAATCAAGCGGATTACTGATAGGTGTTTTGCCGGAAAGCCTTCAGAGCAAGAGCGCATGAGAAGTGACTTCTGGAATGAGGCAATCAAACTTGCTGACTTGCACCACCCGAATGTGGTAGCTTTCTACGGTGTTGTGCTTGATGGCCCAGGAGGTTCTGTGGCAACAGTAACTGAGTATATGGTTAATGGTTCTTTAAGAAATGCCTTGCAGAAGACTGAGAGGAATCTTGACAAGCGCAAATGTCTTTTGATTGCAATGGACGTGGCCTTTGGCATGGAGTACCTGCATGGAAAAAACATTGTACACTTTGACTTGAAAAGTGATAACTTGCTTGTGAATATCCGAGATCCTCACCGCCCAATATGCAAGGTTGGCGACTTGGGTCTGTCCAAAGTAAAATGTCAGACACTGATCTCTGGTGGTGTGAGAGGAACTCTACCATGGATGGCTCCAGAACTGCTGAACGGAAGCAGTAGCCTTGTTTCAGAGAAGGTTGATGTTTTTTCATTTGGTATTGTGATGTGGGAACTCTTGACTGGAGAGGAGCCATATGCTGACTTGCACTATGGTGCTATCATAGGTGGTATTGTTAGCAACACTTTGCGCCCTCCTGTTCCCTCATCTTGCGATCCAGAATGGAGATTGTTGATGGAGAGGTGCTGGTCATCAGAGCCATCAGAGAGACCTACCTTCACTGAGATTGCCAATGAATTACGTTCTTTAGCGACCAAGGTATCCTATCCCAGAGGACAAAACTCTCCTAAAGGACAAAACCAACATCAGCAACACTCTCCATTGCATACTCAAGTCCACAAATGA 3981 0.4624 MAFDQNSIPLNAASAVAEEPLISPATVTPPTPNSVGELFYPPSDSATWCVHPIAHHADVSPAAAPFGSNYGGSSFGNHRVVAAGNALNLGKLSACNGLDNKACNDVNGFGGVRGSRVVANVGDHGGGSHHEGGGSNGGDDSASSGRKVKFLCSFGGKILPRPSDGMLRYVGGQTRIISVRRDVSFNDLVQKMVESYGQAVVIKYQLPEEDLDTLVSVSCHDDVDNMMEEYEKLVERSHDGSAKLRVFLFSASESSECSSSSGGVHFGDLQDTGQKYFDAVNGIGNSTEGINRKESVTSAASTQNSDFSGAETLDSSIVSGGVPLSSPKENVSAASSSDTTATNLVVLEVPGAPVYSGGASAVSLAMPVAKTKTSPTATHNLYFQNEVESEKSVTVTLSQNPFGLQPFVDATSQEVMNHAADYVQLPSQMGFTNPQLLGKTGGHVFAQQQFHDSTHRLALHHQVIPAGVQMTVAQQPSSHVGVRPNVVQPQQQHLLDQYHDENTSGGVRIIQLPAERSYNTFQVPMNQVQPVIVGGNYGWVQVPPQERVVISDGLLPQQQVMIPEKIRRAEDCSMCQKKLPHAHSDPVVQDQHDSRGAGSTPDSTPSHNSFPIEDNVKAQATNRIMPMVTSPLKEGIAEQGARTRPRVLGKLEPPDGVHHTETSGFPHNIEPHTEGGRNFIQKLEEWDHPRNSFFQEKIGMKGREQSPNDEPLGTTPLSYLDDVGNHHLVSVENWVKQDVLNHIPLGEGKSIKTSEGMLQGSQKEYTNELSRVVSKSDAIDNWIRQDHLKPVDARMDTLKITNSEVYVSNDYSFLPVDKPSGNDNLDYSTHHSVEEEVILDNNFGRSKLRVDVNQNKMTGVLPCSSMEISYRNNSRPGECNEAAQPPFWGIPGSSPQSNIGNPHKGDASPSSPSLSLRFGDVQDTRNSLFSNQDPWNIQHGSAEDQQLQAVAENVAASVLHSRTPSNSDLHSGDVSCCETIKYDSVQNNLIDVKCGHKAQDVKSKQLEKANFGFPASGVGKLQVIKNCDLEELIELGSGTFGTVYHGKWRGTDVAIKRITDRCFAGKPSEQERMRSDFWNEAIKLADLHHPNVVAFYGVVLDGPGGSVATVTEYMVNGSLRNALQKTERNLDKRKCLLIAMDVAFGMEYLHGKNIVHFDLKSDNLLVNIRDPHRPICKVGDLGLSKVKCQTLISGGVRGTLPWMAPELLNGSSSLVSEKVDVFSFGIVMWELLTGEEPYADLHYGAIIGGIVSNTLRPPVPSSCDPEWRLLMERCWSSEPSERPTFTEIANELRSLATKVSYPRGQNSPKGQNQHQQHSPLHTQVHK* 1327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0884 1326 PRINTS Tyrosine kinase catalytic domain signature 1111 1124 IPR001245 GO:0004672|GO:0006468
Gso17g0884 1326 PRINTS Tyrosine kinase catalytic domain signature 1148 1166 IPR001245 GO:0004672|GO:0006468
Gso17g0884 1326 PRINTS Tyrosine kinase catalytic domain signature 1219 1241 IPR001245 GO:0004672|GO:0006468
Gso17g0884 1326 PRINTS Tyrosine kinase catalytic domain signature 1263 1285 IPR001245 GO:0004672|GO:0006468
Gso17g0884 1326 MobiDBLite consensus disorder prediction 593 612 - -
Gso17g0884 1326 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1154 1166 IPR008271 GO:0004672|GO:0006468
Gso17g0884 1326 MobiDBLite consensus disorder prediction 318 337 - -
Gso17g0884 1326 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 116 904 - -
Gso17g0884 1326 PANTHER KINASE SUPERFAMILY WITH OCTICOSAPEPTIDE/PHOX/BEM1P DOMAIN-CONTAINING PROTEIN 935 1299 - -
Gso17g0884 1326 MobiDBLite consensus disorder prediction 891 914 - -
Gso17g0884 1326 Gene3D - 168 251 - -
Gso17g0884 1326 CDD STKc_MAP3K-like 1035 1292 - -
Gso17g0884 1326 SUPERFAMILY CAD & PB1 domains 163 258 - -
Gso17g0884 1326 ProSitePatterns Protein kinases ATP-binding region signature. 1035 1066 IPR017441 GO:0005524
Gso17g0884 1326 SMART PB1_new 162 251 IPR000270 GO:0005515
Gso17g0884 1326 SMART serkin_6 1029 1295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0884 1326 Gene3D Phosphorylase Kinase; domain 1 1022 1116 - -
Gso17g0884 1326 MobiDBLite consensus disorder prediction 120 142 - -
Gso17g0884 1326 SUPERFAMILY Protein kinase-like (PK-like) 1024 1291 IPR011009 -
Gso17g0884 1326 MobiDBLite consensus disorder prediction 1299 1326 - -
Gso17g0884 1326 Pfam PB1 domain 167 250 IPR000270 GO:0005515
Gso17g0884 1326 MobiDBLite consensus disorder prediction 634 674 - -
Gso17g0884 1326 ProSiteProfiles Protein kinase domain profile. 1029 1295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0884 1326 MobiDBLite consensus disorder prediction 1297 1326 - -
Gso17g0884 1326 MobiDBLite consensus disorder prediction 578 612 - -
Gso17g0884 1326 Pfam Protein tyrosine and serine/threonine kinase 1034 1292 IPR001245 GO:0004672|GO:0006468
Gso17g0884 1326 CDD PB1_UP2 151 249 - -
Gso17g0884 1326 PANTHER SERINE-THREONINE PROTEIN KINASE 116 904 - -
Gso17g0884 1326 PANTHER SERINE-THREONINE PROTEIN KINASE 935 1299 - -
Gso17g0884 1326 Gene3D Transferase(Phosphotransferase) domain 1 1117 1326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0884 Gso-Chr17 8265036 8273485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0884 87 624 MAP Kinase Kinase Kinase AT3G46920 37.636 2.19e-78 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Gso17g0884 PK_Tyr_Ser-Thr 3.3e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0884 - - gmx:100819234 2545.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0884 17 8265036 8273485 Gso17g0884 17 8265036 8273485 ECH
Gso17g0884 17 8265036 8273485 Gso15g1673 15 25572323 25583969 PCT