Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0882 ATGGCTTTCCACGACCATCTCCAGCACGAAATAGCGTTCCAGCGTTTCACGGAGGAGCAAGAGTTGACCGAGAACAGAGACATGCAGCAGAGGCTCCCACCTCCGACATGGCTCAACAACGTTAACGCGCGTCAACAGAATTTCCTCGACACCGAGAAGAGCGTGGATCGGAACAACCGAAGCGAGAGCAATTGCGAATCCGAGGATTTGAGGGAATACAAAGCGGACATTCTAGGTCACCCTCTCTACGATCAACTGTTGTCGGCGCACGTCTCGTGCCTCAGAATCGCCACGCCGGTGGACCAGCTTCCTAGGATCGATGCGCAGCTTCAGCAGTCGCAGCGCGTGGTTGAAAAGTACTCTGCACTTGCACACAACGGGGTCGTCGATGAGAAGGAGCTTGATCAGTTCATGACCCATTATGTTCTGTTGCTCTGTGCCTTTAAAGAACAACTGCAGCAGCATGTCCGTGTTCATGCCATGGAGGCAGTGATGGCTTGTTGGGATCTGGAGCAATCTCTGCAAAGCTTGACAGGTGTATCTCCTGGTGAAGGAACGGGTGCAACAATGTCAGACGATGAAGATGACCAGGCAGAGAGCAATGCCAACTTATACGAAGGAAGCCTTGATGGCGGCGAAACTCTTGGATTTGGTCCTCTTGTCCCCACTGAAAGTGAAAGATCTTTGATGGAAAGAGTCAGGCATGAGTTGAAGCATGAACTAAAACAGGGTTACAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTAAGAAAGAGACGAGCGGGGAAGCTTCCAGGGGACACCACATCCCTTTTGAAAGCTTGGTGGCAATCACATTCTAAATGGCCTTACCCCACTGAGGAAGACAAGGCTAGATTGGTGCAGGAAACAGGGTTGCAATTAAAGCAGATAAATAATTGGTTCATAAATCAAAGGAAAAGGAACTGGCATACAAATAACCCCTCATCCTCTAGCAACTCCAAAAGCAAGCGCAAGAGTAGTGCAGGAGAAGCCAGTAACCAGAGCTTCATGTGA 1038 0.4942 MAFHDHLQHEIAFQRFTEEQELTENRDMQQRLPPPTWLNNVNARQQNFLDTEKSVDRNNRSESNCESEDLREYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVEKYSALAHNGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDEDDQAESNANLYEGSLDGGETLGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNNPSSSSNSKSKRKSSAGEASNQSFM* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0882 345 SUPERFAMILY Homeodomain-like 258 323 IPR009057 -
Gso17g0882 345 SMART HOX_1 258 323 IPR001356 GO:0003677
Gso17g0882 345 ProSiteProfiles ELK domain profile. 236 256 IPR005539 GO:0003677
Gso17g0882 345 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 23 338 - -
Gso17g0882 345 SMART KNOX1_2 71 115 IPR005540 GO:0003677|GO:0005634
Gso17g0882 345 MobiDBLite consensus disorder prediction 178 198 - -
Gso17g0882 345 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 23 338 - -
Gso17g0882 345 SMART ELK_2 236 257 IPR005539 GO:0003677
Gso17g0882 345 Pfam KNOX1 domain 73 114 IPR005540 GO:0003677|GO:0005634
Gso17g0882 345 Pfam ELK domain 236 257 IPR005539 GO:0003677
Gso17g0882 345 Pfam KNOX2 domain 129 178 IPR005541 GO:0003677|GO:0005634
Gso17g0882 345 SMART KNOX2_2 124 179 IPR005541 GO:0003677|GO:0005634
Gso17g0882 345 ProSiteProfiles 'Homeobox' domain profile. 256 319 IPR001356 GO:0003677
Gso17g0882 345 MobiDBLite consensus disorder prediction 313 345 - -
Gso17g0882 345 Pfam Homeobox KN domain 276 315 IPR008422 GO:0003677|GO:0006355
Gso17g0882 345 Gene3D - 262 340 - -
Gso17g0882 345 CDD homeodomain 259 319 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0882 Gso-Chr17 8254531 8262251 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0882 73 342 Homeobox Transcription Factor Family AT5G11060 83.516 8.62e-166 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gso17g0882 KNOX2 3.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0882 - - gmx:100781997 691.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0882 17 8254531 8262251 Gso17g0882 17 8254531 8262251 ECH
Gso17g0882 17 8254531 8262251 Gso15g1675 15 25802061 25809250 PCT
Gso15g1675 15 25802061 25809250 Gso17g0882 17 8254531 8262251 PCT