Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0876 ATGCCGGACGGAGAATCCTCCGTCGTCGTCGCCGGCGGCCAAGCTTCCATGGAACCCTCCTTAAGCGTCTCCAATCAACTGCAGTCCCTGAGTCTTTCCCAAGACAAAAACCATGATGACTCAGTCAAGAAAGATCCCCGGAAAATTGCAAGAAAGTATCAGTTGGAGTTATGCAAAAAAGCTATGGAGGAAAATATAATTGTGTATTTAGGGACAGGGTGTGGGAAGACCCACATTGCTGTGCTTCTTATGTATGGGATGGGTCATTTGATTCGGAAACCGCAGAAGAACATATGTGTCTTTCTTGCCCCTACTGTGGCTTTAGTCCATCAGCAAGCAAAGGTTATAGCAGACTCTACTAATTTTAAGGTTGGGACATACTGTGGAAGTTCCAAGCGCTTGAAACGTCATCAAGACTGGGAGCAGGAGATTGGACAATATGAGGTTCTTGTTATGACCCCACAAATATTACTTCATAACTTATCTCATTGCTTCATCACAATGGAGATGATTGCACTTTTGATATTTGATGAATGCCATCATGCTCAAGTCAAAAGCAACCATGCTTATGCAGTTATCATGAAAGTCTTCTACAAAAGTAATTCCTCAAAGGTTCCCCGTATATTTGGCATGACTGCTTCCCCTGTTGTAGGAAAAGGTGCTTCTAGTGAAGCAAATCTAGCAAAAAGCATCAATAGTCTTGAACATATACTTGATGCTAAGGTATACTCTGTTGAAGACAAGGAATTGCAATCTTTTGTGACCACTCCTGTGATTAATATATATCATTATGTTTCAACTGCAAGTGGGGAAACTAGCTTGTACCTGAAAATTGAGGAGATTAAACGCCAGTGCATAGCAAACCTTGGTAGGAGTATAGAAGATCACCAGAAAAGGATGAATGCAAAGAAACTTCTGAACCGGATGCATGATAATGTGATTTTCGGTCTGCAGAATCTTGGCATTTGGGGAGCATTGCAAGCTAGTCATATTCTTCTGAGTGGTGATCGTTCTGAGAGGCATGAGTTAGTGGAGGCTGAAGGAAATTCAAGTGATGACTCTCTGTGTGATAAATATCTTGCTCAGGCTGCTGAACTGTTTACTTCACAATGCATGATAGGCGACAGGGTAACTGATTTATCTTCTGTGGAAATATTAAAAGAGCCATTTTTCTCAGCAAAGCTTTTACGACTCATTGGGATATTATCCAACTTTAGGTTGCAAAAGAACATGAAATGTATAATTTTTGTGAATAGAATTGTGACAGCAAGATCCCTGTCATACATTCTACAGAAGCTCAAGCTTCTAAGACAATGGAGGAGTGATTTCCTAGTAGGAGTCCATGCTGGACTGAAGAGTATGTCACGAAAGACCATGAACATCATTGTTGATAAGTTTCGCTCTGGAGAGTTGAATCTACTGGTTGCAACCAAAGTGGGTGAAGAAGGACTTGACATTCAGACATGTTGCCTCGTCATACGATTTGATCTTCCAGAAACTGTTGCCAGCTTTATACAGTCAAGAGGTCGTGCACGTATGCCTCAGTCAGAATATGCATTTTTGGTGGACAGTGGCAATAAGAAGGAACTTGACATAATTGATGGCTTTGAGAAAGATGAATACCGAATGAATATGGAAATTACTTTTCGAACATCCAAGGAGACATACATAATCCCTGAGGAAAGAATATTCAGAGTTGATTCGTCTGGTGCTTCTGTTAGTTCTGGATATAGTATCTCATTGCTTCACCAGTATTGTTCAAAGCTTCCACATGATGAGTACTTTGACCCCAAGCCATGTTTTTATTACTTAGATGATTCAGGGGGGATTTCCTGCCATATAACATTGCCTTCCAATGCACCAATAAACCAAATTTTAGGTACACCACAGTTGTCTATGGAGGCTTCCAAAAGAGATGCTTGCCTGAAAGCAATAGAAGAACTGTATAATTTAGGCACTTTAAGTGATTGTCTCTTGCCAAAACAAGATGATGCAGAGCCAGAGGCGCAGGTTTCAGGCTCTTCTGATGAAGATGAATGTGAAGATGCCATATCAAGAGGAGAATTACATGAGATGCTAGTTCCTTCTGCCTTTGGACAGTCATGGATAAATGAGGATAACATCGTCCGTCTCAACTCTTACTACATAAAATTTTGTCCCTATCCAGAGGATAGGGTCTACAAAGAGTTTGGTCTTTTCATCATGGTTCGGCTTCCAATGGAGGCTGAGAAATTGGAACTTGATCTCCATCTTGCTCATGGTCGATCTGTGATGACAAAATTTGTCCCATTTGGAGTTGTAGAATTTGACAAAGATGAGATTAAGATGGCAGAGAATTTTCAAGAAATGTTCCTCAAAATTATTCTTGATAGATTAGAATTCGTTTCTGAGTTTGTAGACTTGGGTATGGGTGCTGAATCTCACACAGGCACATCAACCTTCTACCTTTTGCTTCCAGTTGTATTGCAAGAATATGGAAATGCCATGAAAGTAGACTGGAAGACTGTGAAGAGATGCCTTTGTTCACCAATTTTCAGGCATCCAGCTGATACTATGGATAAAAAAGTTTTCCCTTTAGATATTCACCTGCAACTTGCCAATGGTTACAGAAGTGTAAGAGATGTCGAGAATAGTTTAGTGTATGCCCCACATAAGAAGAACTTTTATTTTGTCACGAATGTTAACTACCAAAAGAATGGATATAGTCCTCATAATGATTCAGGCACTTCAAGCTATGTGGATTACTTCATTGAAAAGTTTTCCATTCACCTCAAATGTCCAGAACAACCACTTCTACATGTTAAACCAGTCTCCAATTTGCACAACCTGCTACACAACCGAAAGCATGAGGATGCAGAACCACAGGAGCTGGACGAATACTTAATTTATTTGCCTCCTGAGCTTTGTGAACTAAAAATAATAGGTTTTTCGAAGGATATTGGCAGTTCCATATCTTTGCTACCTTCAATTATGCACCGTCTTGGAAACTTGCTGGTGGCTATTGAACTAAAGCACAGGCTATCTTCTTCCTTTCCAGAGGCAGCTGAAATTAGTGCCCTTAGAGTTTTAGAAGCTCTCACTACTGAGAAGTGTCAGGAGCGCTTTTCCCTTGAAAGACTTGAAGTGCTTGGTGATGCTTTTCTTAAATTTGCTGTTGCACGTCATTTTTTTCTCATGCATGACAGCCTTCATGAAGGAGACCTTACAAAAAGGCGCTCCAACGCTGTGAATAATTCCAATCTGTTTAAGTTGGCTATCAAGCGCAATTTGCAGGTCTATATATGCGATCAGACATTTGATCCCACTCAGTTTTATGCATTAGGCCGTCCTTGCCCAAGACTTTGTAGCAATGAAACCAAAGAAAGCATACACTTCTGTTTAAATTCTGTTAAGGAACAAGGAAAAGTAACTGAAACCCAATGTAACAAAAATCATCATTGGTTACATAGGAAAACAATTGCTGATGTGGTTGAAGCTCTGGTTGGAGCATTTCTAGTTGACAGTGGCTTTAAAGCTGCAATTGCTTTTCTTTCATGGATTGGCATTCAAGTTGATTTTGAAGCTTCACAAGTGGTTGATATTTGCATAGCAAGTGCTAGTTATTTACCTCTTTCTTCTGAAGTAGACATTCCTTCTCTTGAAGGTAAGCTAGGACATCACTTTTTTCATAAGGGCCTGCTTCTCCAGGCATTTGTACATCCTTCTTACAATAAGCTTGGAGGAGGCTGTTATCAGCGATTGGAGTTTCTTGGAGATGCTGTCTTGGATTATTTGATTACTTCATATGTATTCTCAGCTTATCCCAAACTAAAGCCTGGTCAATTGACAGATTTGAGATCATTGTCTGTTAACAACAAGGCATTTGCTTGTCTAGCGGTAGATCGCAGTTTTGATAAATTTCTTTTATGTGATTCAAGTGGCCTGTCTGAGGCAATAAAAAAGTATGTTGACTACATTAGAAGACCTGTATCAGATAACAGCATTAAAGAAGGGCCAAAATGTCCCAAGGCACTGGGTGACTTAGTGGAATCTTGTGTTGGTGCCATCCTTCTTGATTCAGGGTTCAATTTGAACAAAGTTTGGAAGATTATGACTTCGTTCTTGGACTCAATCATGAAATTCTCATCAAGCTTGCAGCTCAGTCCTGTTAGGGATTTGCGAGAACTTTGCCAATCTCATAATATGGAGTTGGAGTTTCTGCCAGTGCCCTCAAAATTGACTAAAAGGTTTTCAGTTGAAGCTAAAGTGAGTGGGAATGGTGTATGTGAAACAGCTTCAGCAACTGGTCAAAATAAAAAAGAGGCTTGCAGAATTGCTTCACTGCTACTTTTTTCAAAGTTCAAGGCTCAAGGCTGGAAAGCAAAGTCAAAAACTTTGGAAGAAGTTCTGGAATCAACTTCTAAAATGGAACCAAAACTTATTGGCTATGATGAGACTCCCATTGATGTAACAGATACCAATAAACACATAGTGGTTAATGCAGACCCATACAACAAGTCTAACCCAGAAATTCGCCCTATGCAAGAGACAGATGAAATATGCTCTCCATGTGTGAAACCTTTCGGCCAACGGCTTCAATCTTCTGCTAAGGGAAAGCTTAGTCAAATATTTGAAAATCGTGATTGCAGCAGTGACTTGTCAGGGACAGGAACGGCAAGATCACGATTGTATGAATTATGTGCTTCTTATTGTTGGAAACCTCCTTCATTTGAATGCTGCAAGGCAGAGGGACCTGACCACCTGAAACAATTCACTTGCAAGGTGACCTTAGAGATAGAAGAGGCCCAGAATTTGATTTTAGAGTTTGTTGGGGAACCTCTTTCAAAGAAGAAAGATGCAGCAGAGAGTGCGGCAGAGGGTGCATTTTGGTATCTACAACATGAAGGTTACTTGCCTAGTAGTGGTAATTGA 4911 0.4028 MPDGESSVVVAGGQASMEPSLSVSNQLQSLSLSQDKNHDDSVKKDPRKIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLMYGMGHLIRKPQKNICVFLAPTVALVHQQAKVIADSTNFKVGTYCGSSKRLKRHQDWEQEIGQYEVLVMTPQILLHNLSHCFITMEMIALLIFDECHHAQVKSNHAYAVIMKVFYKSNSSKVPRIFGMTASPVVGKGASSEANLAKSINSLEHILDAKVYSVEDKELQSFVTTPVINIYHYVSTASGETSLYLKIEEIKRQCIANLGRSIEDHQKRMNAKKLLNRMHDNVIFGLQNLGIWGALQASHILLSGDRSERHELVEAEGNSSDDSLCDKYLAQAAELFTSQCMIGDRVTDLSSVEILKEPFFSAKLLRLIGILSNFRLQKNMKCIIFVNRIVTARSLSYILQKLKLLRQWRSDFLVGVHAGLKSMSRKTMNIIVDKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNKKELDIIDGFEKDEYRMNMEITFRTSKETYIIPEERIFRVDSSGASVSSGYSISLLHQYCSKLPHDEYFDPKPCFYYLDDSGGISCHITLPSNAPINQILGTPQLSMEASKRDACLKAIEELYNLGTLSDCLLPKQDDAEPEAQVSGSSDEDECEDAISRGELHEMLVPSAFGQSWINEDNIVRLNSYYIKFCPYPEDRVYKEFGLFIMVRLPMEAEKLELDLHLAHGRSVMTKFVPFGVVEFDKDEIKMAENFQEMFLKIILDRLEFVSEFVDLGMGAESHTGTSTFYLLLPVVLQEYGNAMKVDWKTVKRCLCSPIFRHPADTMDKKVFPLDIHLQLANGYRSVRDVENSLVYAPHKKNFYFVTNVNYQKNGYSPHNDSGTSSYVDYFIEKFSIHLKCPEQPLLHVKPVSNLHNLLHNRKHEDAEPQELDEYLIYLPPELCELKIIGFSKDIGSSISLLPSIMHRLGNLLVAIELKHRLSSSFPEAAEISALRVLEALTTEKCQERFSLERLEVLGDAFLKFAVARHFFLMHDSLHEGDLTKRRSNAVNNSNLFKLAIKRNLQVYICDQTFDPTQFYALGRPCPRLCSNETKESIHFCLNSVKEQGKVTETQCNKNHHWLHRKTIADVVEALVGAFLVDSGFKAAIAFLSWIGIQVDFEASQVVDICIASASYLPLSSEVDIPSLEGKLGHHFFHKGLLLQAFVHPSYNKLGGGCYQRLEFLGDAVLDYLITSYVFSAYPKLKPGQLTDLRSLSVNNKAFACLAVDRSFDKFLLCDSSGLSEAIKKYVDYIRRPVSDNSIKEGPKCPKALGDLVESCVGAILLDSGFNLNKVWKIMTSFLDSIMKFSSSLQLSPVRDLRELCQSHNMELEFLPVPSKLTKRFSVEAKVSGNGVCETASATGQNKKEACRIASLLLFSKFKAQGWKAKSKTLEEVLESTSKMEPKLIGYDETPIDVTDTNKHIVVNADPYNKSNPEIRPMQETDEICSPCVKPFGQRLQSSAKGKLSQIFENRDCSSDLSGTGTARSRLYELCASYCWKPPSFECCKAEGPDHLKQFTCKVTLEIEEAQNLILEFVGEPLSKKKDAAESAAEGAFWYLQHEGYLPSSGN* 1637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0876 1636 Gene3D - 48 284 IPR027417 -
Gso17g0876 1636 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 578 668 IPR005034 GO:0016891
Gso17g0876 1636 Pfam Ribonuclease III domain 1245 1354 IPR000999 GO:0004525|GO:0006396
Gso17g0876 1636 Pfam Ribonuclease III domain 1038 1169 IPR000999 GO:0004525|GO:0006396
Gso17g0876 1636 Gene3D Ribonuclease III domain 1017 1180 IPR036389 GO:0004525|GO:0006396
Gso17g0876 1636 Gene3D paz domain 868 971 - -
Gso17g0876 1636 Gene3D - 387 548 IPR027417 -
Gso17g0876 1636 ProSiteProfiles Ribonuclease III family domain profile. 1210 1354 IPR000999 GO:0004525|GO:0006396
Gso17g0876 1636 Pfam PAZ domain 873 994 IPR003100 GO:0005515
Gso17g0876 1636 Gene3D - 1558 1627 - -
Gso17g0876 1636 Gene3D Dicer dimerisation domain 574 669 IPR038248 -
Gso17g0876 1636 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 528 IPR027417 -
Gso17g0876 1636 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1552 1626 - -
Gso17g0876 1636 ProSitePatterns Ribonuclease III family signature. 1245 1253 IPR000999 GO:0004525|GO:0006396
Gso17g0876 1636 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1551 1627 IPR014720 -
Gso17g0876 1636 ProSiteProfiles PAZ domain profile. 873 973 IPR003100 GO:0005515
Gso17g0876 1636 CDD DSRM_EIF2AK2-like 1380 1447 - -
Gso17g0876 1636 PANTHER DICER-RELATED 46 1629 - -
Gso17g0876 1636 SMART riboneu5 1225 1377 IPR000999 GO:0004525|GO:0006396
Gso17g0876 1636 SMART riboneu5 1022 1189 IPR000999 GO:0004525|GO:0006396
Gso17g0876 1636 MobiDBLite consensus disorder prediction 1 22 - -
Gso17g0876 1636 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 394 557 IPR001650 -
Gso17g0876 1636 Gene3D - 1379 1458 - -
Gso17g0876 1636 SUPERFAMILY RNase III domain-like 1209 1371 IPR036389 GO:0004525|GO:0006396
Gso17g0876 1636 SMART helicmild6 424 514 IPR001650 -
Gso17g0876 1636 Pfam Helicase conserved C-terminal domain 401 512 IPR001650 -
Gso17g0876 1636 SUPERFAMILY dsRNA-binding domain-like 1551 1632 - -
Gso17g0876 1636 SMART ultradead3 46 251 IPR014001 -
Gso17g0876 1636 CDD RIBOc 1023 1179 IPR000999 GO:0004525|GO:0006396
Gso17g0876 1636 PANTHER DICER-LIKE PROTEIN 4 46 1629 - -
Gso17g0876 1636 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1381 1449 IPR014720 -
Gso17g0876 1636 ProSiteProfiles Ribonuclease III family domain profile. 1000 1169 IPR000999 GO:0004525|GO:0006396
Gso17g0876 1636 CDD DEXHc_dicer 48 247 - -
Gso17g0876 1636 SMART PAZ_2_a_3 851 999 IPR003100 GO:0005515
Gso17g0876 1636 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 57 233 IPR014001 -
Gso17g0876 1636 SUPERFAMILY PAZ domain 870 971 IPR036085 GO:0005515
Gso17g0876 1636 Pfam DEAD/DEAH box helicase 52 213 IPR011545 GO:0003676|GO:0005524
Gso17g0876 1636 Gene3D Ribonuclease III domain 1207 1378 IPR036389 GO:0004525|GO:0006396
Gso17g0876 1636 SMART DRBM_3 1552 1626 IPR014720 -
Gso17g0876 1636 SMART DRBM_3 1382 1448 IPR014720 -
Gso17g0876 1636 CDD RIBOc 1226 1376 IPR000999 GO:0004525|GO:0006396
Gso17g0876 1636 SUPERFAMILY dsRNA-binding domain-like 1336 1447 - -
Gso17g0876 1636 Pfam Dicer dimerisation domain 578 663 - -
Gso17g0876 1636 SUPERFAMILY RNase III domain-like 1022 1183 IPR036389 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0876 Gso-Chr17 8177519 8199627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0876 412 511 Eukaryotic Initiation Factors Gene Family AT3G19760 32.000 3.14e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0876 K11592 - gmx:100818702 3245.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0876 17 8177519 8199627 Gso17g0876 17 8177519 8199627 ECH