Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0874 ATGGCGCCGCAGAAACTCAACGATTACGAACGGAAGCGACTCGAGAACATTCGCCGCAACGATGAAATGATGGCTGCCCTCAAACTCCACTCCAAAGCCACCCAACTCTCCAACTTCAAGCGTAGTCAAAGGGTTGGAACCAAATCCTACAACATGAAATCGGAAAAGAAACCCAAAACCGAAACCCCAATTGTGATTAGGCGCTCCCTCCGAACAAGAGGTATTCCGCCAGATTCCAAAGGTCTTGTCGGAGATTCCGTGGGCCCCACCACTCCCACTAAAACTAAACCTTCCGTTGTTAATTTGGGTCCTATTTCCATGGCTGATGCTCGTGAAAGCGCTCACTCTGATAGCTCCTTCGTTGAATCACTCATGGGTATGGCCCAATTGGAAGCCCAAGATGTTAGTGTTGAAAAAGAGAAAGTGGAGGCTTCCCTTGGGTTGGAATCTCTGTATTTGGATCCCAAGAATATTGCGCGGGTTGTTCCTGGAAGGATAACCAGTTTGCGATTTTTTCCGTCCAGTAGTGTCAAAATGGTCGCGGTGGGTAACAAGTTTGGGAATGTCGGGTTCTGGAATGTGGGAGAAAGTGAAGTTCATTTATACCGACCCCATCGAGCTCCCATTTCTGGGATCCTGATTCAACCACATTGCTTCTCCAAGATATACACAAGTTGCTATGATGGAATTCTCCGGCTAATGGATGTTGAGAAGGAAATCTTTGATCTGGTATTTGAGTGTGATGAAAGTATATATGCTCTCTCTCTACCAACGAATGAGACAAACTGCCTATATCTTGCTGAGGGTTATGGAGGTTTGACTATTTGGGATAACAGGATTGGAAAACGTTCATCACACTGGGTTTTGCATGAAAGTAGGATTAACACCATAGATTTCAACTGTGAAAACCCTCATATTGTAGCTACTAGTTCCACTGATGGAACTGCCTGCACCTGGGATTTGAGATATACTGATGGGGATAAGCTCAGAGCCTTGAGGACATTTACCCACAAAAGATCTGTGCAATCTGCTTACTTCTCTCCTTCTGGATGTAGCCTGGCAACTACAAGCTTGGACAACACAATTGGTATTTACAGTGGAGTTAACTTGGAGGATGCAGCTGTTATTAATCATAACAATCTGACTGGCAGATGGCTTTCTACTTTCAGAGCAAAATGGGGTTGGGATGACTCATATCTCTTTGTTGGAAACATGAAAAGAGGAGTTGATGTTGTCTCATCAGTTGAAAGGAAAATAGTTATGACTCTAGAGAGCCAGCACATGTCTGCCATTCCTTGCAGATTTGATACACACTCTTACGAGGTTGGGATGCTAGCAGGAGCTACAAGTGGAGGCCAGGTTTATATTTGGACGTCGCGCTAG 1383 0.4497 MAPQKLNDYERKRLENIRRNDEMMAALKLHSKATQLSNFKRSQRVGTKSYNMKSEKKPKTETPIVIRRSLRTRGIPPDSKGLVGDSVGPTTPTKTKPSVVNLGPISMADARESAHSDSSFVESLMGMAQLEAQDVSVEKEKVEASLGLESLYLDPKNIARVVPGRITSLRFFPSSSVKMVAVGNKFGNVGFWNVGESEVHLYRPHRAPISGILIQPHCFSKIYTSCYDGILRLMDVEKEIFDLVFECDESIYALSLPTNETNCLYLAEGYGGLTIWDNRIGKRSSHWVLHESRINTIDFNCENPHIVATSSTDGTACTWDLRYTDGDKLRALRTFTHKRSVQSAYFSPSGCSLATTSLDNTIGIYSGVNLEDAAVINHNNLTGRWLSTFRAKWGWDDSYLFVGNMKRGVDVVSSVERKIVMTLESQHMSAIPCRFDTHSYEVGMLAGATSGGQVYIWTSR* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0874 460 SMART WD40_4 154 193 IPR001680 GO:0005515
Gso17g0874 460 SMART WD40_4 328 366 IPR001680 GO:0005515
Gso17g0874 460 SMART WD40_4 195 235 IPR001680 GO:0005515
Gso17g0874 460 SMART WD40_4 280 320 IPR001680 GO:0005515
Gso17g0874 460 PANTHER UNCHARACTERIZED 1 459 - -
Gso17g0874 460 SUPERFAMILY WD40 repeat-like 162 457 IPR036322 GO:0005515
Gso17g0874 460 MobiDBLite consensus disorder prediction 73 99 - -
Gso17g0874 460 Gene3D - 157 460 IPR015943 GO:0005515
Gso17g0874 460 PANTHER WD REPEAT-CONTAINING PROTEIN 76 1 459 IPR033052 GO:0006974
Gso17g0874 460 ProSitePatterns Trp-Asp (WD) repeats signature. 307 321 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0874 Gso-Chr17 8165771 8168377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0874 165 411 U-box Gene Family AT1G04510 24.706 1.99e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0874 K24755 - gmx:100778960 915.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0874 17 8165771 8168377 Gso17g0874 17 8165771 8168377 ECH