Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0870 ATGTCAGAGCAGGAAACAGATTCCTGCGGCTTGCTCTTATTCTTTTTCTTGATCCTTCTTTCAGGTAAAGTTGCTGTAGGGGAATCTTTGGACAAAGACAAAGAGGTTCTGCTGAAGCTGAAATTTTACCTGGACAGCAAAATTCTTGCAGACAGAGGAGGTTACATATATTGGAACGCCAATAGCTCCAATCCTTGTGAATGGAAAGGAATTTCATGCAGTGCTACGAAGAGGGTGGTTGGCATAGAACTTTCTAATAGTGACATCACCGGTGAGATATTCATGAATTTTTCGCAGCTCACTGAACTCACACACCTTGATCTCTCTCAGAACACGCTCTCCGGCGAGATTCCTGAGGACTTGAGGCACTGCCACAAGCTTGTACATCTCAACCTATCACATAATATTCTTGAAGGGGAGCTGAACTTGACTGGATTGATAGGCTTGCGCACATTAGACTTGTCAAATAACAGATTTTATGGGGATATTGGGTTGAATTTCCCTTCCATTTGTGCCAATTTAGTCGTTGCGAATGTCTCAGGTAATAAATTGACTGGTGTGATTGAAAACTGCTTTGATCAATGTCTCAAGTTGCAGTACTTGGATTTGAGCACCAACAATCTGAGTGGAAGCATATGGATGAAGTTTTCGAGGCTCAAAGAGTTTTCTGTTGCGGAGAACCATCTAAATGGGACTATTCCTTTGGAAGCTTTTCCTTTGAATTGTAGCCTTCAAGAACTAGACCTTTCACAAAATGGATTTGCTGGTGAGGCACCTAAGGGGGTTGCTAACTGCAAGAATTTAACAAGTCTGAATCTTTCTAGTAACAAATTTACTGGGGCTATTCCCGTTGAAATAGGGTCCATCTCGGGCCTCAAAGCATTGTACTTGGGAAACAACAGCTTTTCAAGAGAGATTCCTGAGGCCCTTCTGAACTTGACCAATTTGTCCTTCTTGGATTTGAGCAGAAACCAATTTGGTGGGGACATACAAAAGATATTTGGCAAATTTAAGCAAGTAAGCTTTCTTCTGTTGCATTCAAATAATTACAGTGGGGGATTGATATCCTCAGGAATTCTCACATTGCCAAACATTTGGCGGTTAGACCTAAGCTACAATAACTTTTCAGGTCTATTACCTGTTGAGATTTCTCAAATGACTGGTCTGAAGTTTCTGATGTTATCCTACAACCAATTCAATGGATCCATTCCAACCGAATTTGGAAACATGACTCAACTGCAGGCACTCGACCTTGCCTTCAACAATTTGAGTGGATCTATACCCTCAAGCCTTGGAAACTTGAGCTCCCTCTTATGGTTGATGCTTGCAAACAATTCTTTAACTGGAGAAATCCCTCGAGAGTTGGGAAACTGTTCAAGCTTGTTATGGCTAAACCTTGCCAACAATAAGCTCTCTGGAAAGTTGCCTTCTGAACTGTCCAAAATTGGAAGGAATGCCACGACCACATTTGAATCGAATAGGCAAAACTATCGAATGGTTGCTGGATCTGGTGAATGCTTAGCAATGAGGAGATGGATACCTGCGGATTACCCTCCATTCAGCTTTGTGTACAGCCTCTTAACCAGGAAAACTTGTAGAGAGCTTTGGGACAAATTGCTCAAAGGATATGGTGTTTTCCAGATTTGCACACCTGGTGAAAGAATTCGCAGAACACAGATATCCGGGTATATTCAGCTAAGTTCGAACCAGCTCAGTGGTGAAATCCCTTCAGAAATTGGGACTATGGTGAACTTCAGCATGATGCACATGGGGTTTAACAACTTCTCTGGGAAGTTCCCTCCAGAGATTGCAAGTATTCCCATTGTGGTGCTAAACATCACAAGTAACCAGTTTTCAGGTGAAATCCCCGAAGAAATTGGCAACTTGAAGTGTTTGATGAATCTTGACTTGTCTTGCAACAACTTCTCTGGGACGTTTCCAACAAGTTTGAACAAATTGACAGAGCTTAACAAGTTCAACATCTCATACAACCCCTTAATATCCGGTGTGGTTCCATCAACAGGACAGTTTGCTACCTTTGAGAAAAATTCATATTTAGGCAACCCCTTTCTGATCCTTCCCGAGTTTATTGATAACGTTACCAACAATCAAAACAACACCTTTCCCAAAGCGCATAAAAAGTCCACAAGACTGTCTGTGTTTTTGGTGTGTATAGTTATAACACTGGTTTTGGCAGTATTCGGACTTCTTACAATCCTAGTCTGTGTATCGGTGAAAAGCCCTTCAGAGGAACCAAGATACCTCTTGAGGGATACAAAACAGTGGCATGATTCTAGCAGCTCCGGATCCTCATCATGGATGTCTGACACAGTTAAGGTTATCCGTTTGAACAAGACAGCTTTCACACATGCTGATATTCTCAAAGCAACTAGCAGCTTCTCAGAGGAAAGAATCATAGGAAAAGGAGGATTTGGAACAGTGTACAAGGGAGTGTTTTCAGATGGCAGACAAGTAGCAGTGAAGAAGCTTCAGAGGGAAGGCCTCGAAGGAGAAAAAGAATTCAAGGCTGAAATGGAGGTTCTGAGTGGTCATGGATTTGGCTGGCCTCATCCAAACCTGGTCACGCTCTACGGTTGGTGCCTAAATGGTTCAGAGAAGATACTGATTTATGAGTACATAGAAGGTGGAAGCTTGGAGGATTTAGTCACTGATAGAACACGTTTGACATGGAGGAGGAGGCTAGAAGTGGCAATTGATGTGGCACGTGCACTAGTCTATTTGCACCACGAGTGCTACCCTTCTGTTGTGCACAGAGATGTGAAGGCTAGCAATGTATTACTAGACAAAGATGGGAAGGCCAAGGTCACTGATTTTGGGCTTGCAAGAGTGGTTGATGTTGGGGACAGTCATGTGAGTACTATGGTGGCTGGGACAGTAGGCTATGTTGCACCAGAATATGGACACACATGGCAAGCTACTACAAAAGGGGATGTGTACAGTTTTGGGGTGTTGGTTATGGAGTTGGCAACAGCAAGAAGAGCAGTGGATGGAGGTGAAGAGTGTTTGGTGGAGTGGGCTAGGCGTGTTATGGGTTATGGACGACATCATCGCGGGTTGGGTCGTTCTGTTCCAGTTTTGCTAATGGGTTCTGGGCTTGTTGGTGGGGCTGAGGAGATGGGTGAGTTGCTAAGGATTGGGGTGATGTGTACTGCTGATTCACCACAGGCTAGACCCAACATGAAGGAGGTTCTTGCTATGCTGATTAAGATATCTAATCCCAAGGGGTACTCAAGTTATGGACACTACCTTGTTTAG 3276 0.4341 MSEQETDSCGLLLFFFLILLSGKVAVGESLDKDKEVLLKLKFYLDSKILADRGGYIYWNANSSNPCEWKGISCSATKRVVGIELSNSDITGEIFMNFSQLTELTHLDLSQNTLSGEIPEDLRHCHKLVHLNLSHNILEGELNLTGLIGLRTLDLSNNRFYGDIGLNFPSICANLVVANVSGNKLTGVIENCFDQCLKLQYLDLSTNNLSGSIWMKFSRLKEFSVAENHLNGTIPLEAFPLNCSLQELDLSQNGFAGEAPKGVANCKNLTSLNLSSNKFTGAIPVEIGSISGLKALYLGNNSFSREIPEALLNLTNLSFLDLSRNQFGGDIQKIFGKFKQVSFLLLHSNNYSGGLISSGILTLPNIWRLDLSYNNFSGLLPVEISQMTGLKFLMLSYNQFNGSIPTEFGNMTQLQALDLAFNNLSGSIPSSLGNLSSLLWLMLANNSLTGEIPRELGNCSSLLWLNLANNKLSGKLPSELSKIGRNATTTFESNRQNYRMVAGSGECLAMRRWIPADYPPFSFVYSLLTRKTCRELWDKLLKGYGVFQICTPGERIRRTQISGYIQLSSNQLSGEIPSEIGTMVNFSMMHMGFNNFSGKFPPEIASIPIVVLNITSNQFSGEIPEEIGNLKCLMNLDLSCNNFSGTFPTSLNKLTELNKFNISYNPLISGVVPSTGQFATFEKNSYLGNPFLILPEFIDNVTNNQNNTFPKAHKKSTRLSVFLVCIVITLVLAVFGLLTILVCVSVKSPSEEPRYLLRDTKQWHDSSSSGSSSWMSDTVKVIRLNKTAFTHADILKATSSFSEERIIGKGGFGTVYKGVFSDGRQVAVKKLQREGLEGEKEFKAEMEVLSGHGFGWPHPNLVTLYGWCLNGSEKILIYEYIEGGSLEDLVTDRTRLTWRRRLEVAIDVARALVYLHHECYPSVVHRDVKASNVLLDKDGKAKVTDFGLARVVDVGDSHVSTMVAGTVGYVAPEYGHTWQATTKGDVYSFGVLVMELATARRAVDGGEECLVEWARRVMGYGRHHRGLGRSVPVLLMGSGLVGGAEEMGELLRIGVMCTADSPQARPNMKEVLAMLIKISNPKGYSSYGHYLV* 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0870 1091 Gene3D Transferase(Phosphotransferase) domain 1 880 1085 - -
Gso17g0870 1091 SUPERFAMILY L domain-like 563 693 - -
Gso17g0870 1091 SMART LRR_typ_2 410 433 IPR003591 -
Gso17g0870 1091 SMART LRR_typ_2 386 409 IPR003591 -
Gso17g0870 1091 SMART LRR_typ_2 100 124 IPR003591 -
Gso17g0870 1091 SMART LRR_typ_2 289 313 IPR003591 -
Gso17g0870 1091 SMART LRR_typ_2 362 385 IPR003591 -
Gso17g0870 1091 SMART LRR_typ_2 434 458 IPR003591 -
Gso17g0870 1091 Pfam Leucine rich repeat N-terminal domain 31 74 IPR013210 -
Gso17g0870 1091 Gene3D Ribonuclease Inhibitor 240 338 IPR032675 -
Gso17g0870 1091 Gene3D Ribonuclease Inhibitor 409 501 IPR032675 -
Gso17g0870 1091 SUPERFAMILY Protein kinase-like (PK-like) 782 1076 IPR011009 -
Gso17g0870 1091 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 2 1081 - -
Gso17g0870 1091 PRINTS Leucine-rich repeat signature 198 211 - -
Gso17g0870 1091 PRINTS Leucine-rich repeat signature 313 326 - -
Gso17g0870 1091 Pfam Protein kinase domain 801 1003 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0870 1091 SMART serkin_6 800 1081 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0870 1091 Pfam Leucine rich repeat 148 208 IPR001611 GO:0005515
Gso17g0870 1091 Pfam Leucine rich repeat 96 135 IPR001611 GO:0005515
Gso17g0870 1091 Pfam Leucine rich repeat 267 326 IPR001611 GO:0005515
Gso17g0870 1091 Pfam Leucine rich repeat 412 471 IPR001611 GO:0005515
Gso17g0870 1091 Gene3D Ribonuclease Inhibitor 554 708 IPR032675 -
Gso17g0870 1091 ProSitePatterns Protein kinases ATP-binding region signature. 806 829 IPR017441 GO:0005524
Gso17g0870 1091 Gene3D Phosphorylase Kinase; domain 1 763 879 - -
Gso17g0870 1091 CDD STKc_IRAK 806 1077 - -
Gso17g0870 1091 SUPERFAMILY RNI-like 67 283 - -
Gso17g0870 1091 Gene3D Ribonuclease Inhibitor 29 169 IPR032675 -
Gso17g0870 1091 Gene3D Ribonuclease Inhibitor 339 408 IPR032675 -
Gso17g0870 1091 Gene3D Ribonuclease Inhibitor 170 239 IPR032675 -
Gso17g0870 1091 ProSiteProfiles Protein kinase domain profile. 800 1091 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0870 1091 SUPERFAMILY L domain-like 216 478 - -
Gso17g0870 1091 ProSitePatterns Serine/Threonine protein kinases active-site signature. 922 934 IPR008271 GO:0004672|GO:0006468
Gso17g0870 1091 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 2 1081 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0870 Gso-Chr17 8137199 8141243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0870 66 1074 Receptor kinase-like Gene Family AT1G55610 32.916 7.83e-156 492
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Gso17g0870 Pkinase 4.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0870 - - gmx:100816573 2117.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0199 5 2083712 2087704 Gso17g0870 17 8137199 8141243 GST