Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0858 ATGGATGCTGAAACTGAGGCTGAGGAACTTATTAATTTGAACAATATATCAAGTAACTGTGGTGGGAATAATAGTAAGAGTGGCGATGGATTCATTGACAGAAGCAAAGTGAGGATTTTGTTGTGTGATAACGATTCCAAGAGTTCTGAAGAGGTTTTTACTCTTCTTTTGGGATGCTCTTATCAGGTTATTTCGGTAAGGTCAGCTAGGCAAGTGATTGATGCACTGAATGCGGAGGGGCAATACATAGACATGATACTAGCTGAAGTTGATCTTCCAATAAAGAAAGGCATGAAGTTGTTGAAGTACATAGCAAGGGATAAAGAATTGTGCCGAATCCCTGTTATAATGATGTCTGCACAAGATGAGGTGTCCATTGTTGTAAAGTGCTTGAGGCTTGGAGCGGCAGATTACCTAGTAAAGCCTTTACGCACAAATGAACTACTAAATTTGTGGACACACATGTGGAGAAGGAGGCGCATGCTTGGACTTGTAGAGAACAACATCTTGAATTATGACTTTGATCTGGTAGCATCAGATCCAAGTGATGCCAATACAAACAGTACCACCTTGTTCTCTGATGACACAGATGACAAGTCCAAAAGGGGCACTAATCCAGAGACAGGAGTATTAATCCAACAAGAACAAGAGGCTAGTATTGCCACCATTGCTGCTGTTGTGGTGGAGCTTCCCAGTTATCTTGTATCACAATATCAGCCTGATGTGCCTGGAATAAGTGATCGTCGAACAGGTACTCCAAGGCAGCATCCATCAAGCAGCAGAACTATTGATGGACATTTTTCATCTGGTCCAAAGAAGAGTGAACTGAAGATTGGAGAGTCATCAGCCTTTTTCACCTATGTCAAAGCAACAACATTGAAGAGCAACATTGAAGAGAGTGCTCATGTTGACAATAGTAACAATACTACTACTACTACTACTACTACAGAAGTTAGGATGGAAGATATGAATCAAGCATGTACTGAACAGGGGGATAATGGCCTTAAAACACACAAAAATGGAGAAATGTTTGGAAACCATTCTCAAGATGACTTACCGAGCAGCAATAGTATCCTCGATTCTTTCTCTATTGAGAGATCTTGTACTCCACCTGCATCGATGGAAGTTTCACAGCAAAAGCATTACAAGGAAGAACATTCTCAGGGAGTGGTGCATCCAAGAAATGGAAGTCACGGTTCTGTGCCTGCTCAACATGCTTATCCATATTATATTTCAGGAGTTGTTAATCACGTTATGATGCCATCATCGGCACAATTGTATCAAAAGAATATCCAGGACCTGCAGATTCATGCTGGTTCTTCTATGATTGCACAGTACAATCATCTTCCCCAATGTCCTCCTCATGCGAATGGGATGACAAATTTCCCATATTATCCAATGAACATTTGCTTACAACCTGGTCAGATTTCTACTAATTCTTGGCCATCATTAGGAAGTTCAAGTTCATGTGAAGTACAAATAAGTAAAGTTGATAGGAGAGAGGCAGCATTGATGAAGTTTAGACAGAAAAGGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTATGTCAACAGAAAACGGCTCGCTGAAAGGCGGCCTCGCGTGAGGGGACAGTTTGTCAGAAAGTTGAATGGTATTAATGTGGATCTTAATGGACAACCTGCTTCCACTGATTATGATGAAGATGATGAAGAGGAAGACAATCATAGGGCAAGAGATTCTTCTCCTGAGGTTGCTTGA 1740 0.4103 MDAETEAEELINLNNISSNCGGNNSKSGDGFIDRSKVRILLCDNDSKSSEEVFTLLLGCSYQVISVRSARQVIDALNAEGQYIDMILAEVDLPIKKGMKLLKYIARDKELCRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVENNILNYDFDLVASDPSDANTNSTTLFSDDTDDKSKRGTNPETGVLIQQEQEASIATIAAVVVELPSYLVSQYQPDVPGISDRRTGTPRQHPSSSRTIDGHFSSGPKKSELKIGESSAFFTYVKATTLKSNIEESAHVDNSNNTTTTTTTTEVRMEDMNQACTEQGDNGLKTHKNGEMFGNHSQDDLPSSNSILDSFSIERSCTPPASMEVSQQKHYKEEHSQGVVHPRNGSHGSVPAQHAYPYYISGVVNHVMMPSSAQLYQKNIQDLQIHAGSSMIAQYNHLPQCPPHANGMTNFPYYPMNICLQPGQISTNSWPSLGSSSSCEVQISKVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKLNGINVDLNGQPASTDYDEDDEEEDNHRARDSSPEVA* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0858 579 Pfam CCT motif 500 542 IPR010402 GO:0005515
Gso17g0858 579 SMART REC_2 37 152 IPR001789 GO:0000160
Gso17g0858 579 Gene3D - 37 238 - -
Gso17g0858 579 PANTHER RESPONSE REGULATOR AND TRANSCRIPTION FACTOR RR-A-TYPE FAMILY-RELATED 2 565 - -
Gso17g0858 579 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 565 IPR045279 GO:0009736
Gso17g0858 579 MobiDBLite consensus disorder prediction 187 206 - -
Gso17g0858 579 ProSiteProfiles CCT domain profile. 500 542 IPR010402 GO:0005515
Gso17g0858 579 MobiDBLite consensus disorder prediction 251 267 - -
Gso17g0858 579 MobiDBLite consensus disorder prediction 550 579 - -
Gso17g0858 579 Pfam Response regulator receiver domain 39 150 IPR001789 GO:0000160
Gso17g0858 579 SUPERFAMILY CheY-like 35 163 IPR011006 -
Gso17g0858 579 ProSiteProfiles Response regulatory domain profile. 38 156 IPR001789 GO:0000160
Gso17g0858 579 MobiDBLite consensus disorder prediction 239 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0858 Gso-Chr17 8035033 8040099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0858 26 577 Response Regulator Gene Family AT5G61380 50.872 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Gso17g0858 Response_reg 6.2e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0858 K12127 - gmx:100813917 1105.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0208 5 2174357 2179158 Gso17g0858 17 8035033 8040099 GST