Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0854 ATGGAAACTGGAATAATCCAGGGACCTTGGGGATTTCGCTCTCTATCCAAATTCGTTTTATGCACCATTTCTGGGGCCCTTACCGTGTGTTTTGCCCTTGCTGGGGCCCTGACAGGAGCTATAGCTGGTGCTCTAGCAGCTAAGGCCACTAAGAGTGGTCTTCTCCGGGGAGTTTCATTGGGTGCCATTGCCGGCTCTATACTCTCTGTGGAGGTGTTGGAAGCTTCCCGTGCCTATTGGTGTATGGAGCAAACTGGCTCACGGAGTGCATCATCTATGGCAGATTTCATAGAGGAACTTGTTCGTGGGAGGCTTGTTGAGGAATCCCTTACACCTGCTATTTTAACTGCTTACAATTTGCAGGTTGGCATTGCGAATACAGGCTATGTTGAGACTCATGATGTTCATGGCTTAGTTGCACCCAGAGGACTGTCAGGAGATTCATTGAAGAGGTTACCCCACCATATGATCTCAAAGGCAGAGAATACCTGCTGTGCAATATGTTTGCAGGATATTGAAGTAGGGGAAATTGCAAGAAGCTTACCTCGCTGTCACCATACATTTCACTTGATATGTGTGGACAAATGGCTTGTCAAGAATGATTCTTGTCCTGTCTGCAGACAGAATGTATAA 633 0.4692 METGIIQGPWGFRSLSKFVLCTISGALTVCFALAGALTGAIAGALAAKATKSGLLRGVSLGAIAGSILSVEVLEASRAYWCMEQTGSRSASSMADFIEELVRGRLVEESLTPAILTAYNLQVGIANTGYVETHDVHGLVAPRGLSGDSLKRLPHHMISKAENTCCAICLQDIEVGEIARSLPRCHHTFHLICVDKWLVKNDSCPVCRQNV* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0854 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 210 IPR013083 -
Gso17g0854 210 ProSiteProfiles Zinc finger RING-type profile. 165 207 IPR001841 -
Gso17g0854 210 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 11 209 IPR044523 -
Gso17g0854 210 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 11 209 - -
Gso17g0854 210 SUPERFAMILY RING/U-box 159 210 - -
Gso17g0854 210 Pfam Ring finger domain 165 207 IPR001841 -
Gso17g0854 210 SMART ring_2 165 206 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0854 Gso-Chr17 8014982 8018808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0854 14 210 C3H Transcription Factor Family AT1G74410 55.721 1.15e-74 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0854 - - gmx:100306666 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0210 5 2192432 2195897 Gso17g0854 17 8014982 8018808 GST