Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0851 ATGCCTTCTGCTTTTAATTTCCTCACAACTTCTCTGCTTCCCTTTCTCCCTCTCTATCGAGGAAACATGGTATTTTTGGGTGTTCTCTTGGTGGGGTTTCTCTTAGGTGCTTATGGGGACAGTGATGGTTGGATGGATGCTCATGCTACCTTCTATGGAGGGGGCGATGCCTCTGGCACAATGGGTGGAGCTTGTGGATATGGAAACCTGTATAGCCAGGGCTACGGAACTAACACGGCTGCTTTGAGCACGGCCTTGTTCAACAATGGTTTGAGCTGTGGGGCTTGCTTTGAGATCAAGTGTGTCAATGACCAAAGGTGGTGCCTTCCAGACACAGTTGTGGTCACTGCCACCAATTTCTGTCCACCAAACAATGCCCTCCCAAATGATGCAGGTGGCTGGTGCAACCCTCCCCTTCAACATTTTGATCTCTCTCAGCCTGTCTTCCAACAAATAGCTCAATACAGAGCTGGCATAGTACCTGTGGCTTACAAAAGGGTCCCATGTCAAAAGAGAGGAGGCATCAGGTTCACCATCAATGGCCATTCTTACTTCAATCTAGTCCTAATCACCAATGTTGGTGGTGCTGGTGATGTTCAAGCAGTTTCAATCAAAGGTTCAAGGACTAATTGGCAACCAATGTCCAGAAACTGGGGTCAGAACTGGCAAAGCAACACTTACCTCAATGGACAAAGCCTCTCCTTTAAGGTTACCACTAGCGAGGGCCGCACCTTGGTCTCTAACAATGTTGCCCCTGATAGCTGGTCCTTTGGCCAGACCTTCACAGGGAAACAATTCAATTAA 804 0.4813 MPSAFNFLTTSLLPFLPLYRGNMVFLGVLLVGFLLGAYGDSDGWMDAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDQRWCLPDTVVVTATNFCPPNNALPNDAGGWCNPPLQHFDLSQPVFQQIAQYRAGIVPVAYKRVPCQKRGGIRFTINGHSYFNLVLITNVGGAGDVQAVSIKGSRTNWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSEGRTLVSNNVAPDSWSFGQTFTGKQFN* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0851 267 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 263 IPR007117 -
Gso17g0851 267 SUPERFAMILY Barwin-like endoglucanases 32 192 IPR036908 -
Gso17g0851 267 PANTHER EXPANSIN-A15 25 267 IPR002963 GO:0009664
Gso17g0851 267 Pfam Lytic transglycolase 79 164 IPR009009 -
Gso17g0851 267 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 62 174 IPR007112 -
Gso17g0851 267 Pfam Expansin C-terminal domain 175 252 IPR007117 -
Gso17g0851 267 Gene3D - 174 266 IPR036749 -
Gso17g0851 267 SUPERFAMILY PHL pollen allergen 171 263 IPR036749 -
Gso17g0851 267 SMART dpbb_1 79 164 IPR007112 -
Gso17g0851 267 PRINTS Expansin/Lol pI family signature 43 58 IPR007118 GO:0005576
Gso17g0851 267 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Gso17g0851 267 PRINTS Expansin/Lol pI family signature 83 101 IPR007118 GO:0005576
Gso17g0851 267 PRINTS Expansin/Lol pI family signature 157 173 IPR007118 GO:0005576
Gso17g0851 267 PRINTS Expansin/Lol pI family signature 211 225 IPR007118 GO:0005576
Gso17g0851 267 PRINTS Expansin/Lol pI family signature 249 263 IPR007118 GO:0005576
Gso17g0851 267 PANTHER EXPANSIN 25 267 - -
Gso17g0851 267 PRINTS Expansin signature 74 88 IPR002963 GO:0009664
Gso17g0851 267 PRINTS Expansin signature 101 112 IPR002963 GO:0009664
Gso17g0851 267 PRINTS Expansin signature 113 123 IPR002963 GO:0009664
Gso17g0851 267 PRINTS Expansin signature 132 149 IPR002963 GO:0009664
Gso17g0851 267 PRINTS Expansin signature 149 162 IPR002963 GO:0009664
Gso17g0851 267 PRINTS Expansin signature 173 185 IPR002963 GO:0009664
Gso17g0851 267 PRINTS Expansin signature 185 206 IPR002963 GO:0009664
Gso17g0851 267 PRINTS Expansin signature 220 241 IPR002963 GO:0009664
Gso17g0851 267 PRINTS Expansin signature 249 265 IPR002963 GO:0009664
Gso17g0851 267 Gene3D - 36 170 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0851 Gso-Chr17 7973534 7976972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0851 18 266 Expansin Gene Family AT2G03090 77.381 5.66e-149 415
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0851 - K20628 gmx:100816718 533.102