LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso17g0850	ATGCTGCCAACAGTTGGTGTCTCAAAAATCTTACCGTCCATTTTCACGTTACGAGCTTGGATGGGAAGAGTTAAATTGAAGATCAAGAAATTAGAAAGCATAAGCAATCGGCATGTGACTTATTCAAAGCGAAAAAGTGGAATTATAAAAAAAGCAAAGGAATTATCAATACTGTGTGATATAGATATCATCCTTCTTATGTTTTCTCCAACAGGAAAGCCTACATTACTACAAGGAGAACGCAGCAATATTGAAGAGGTCATCGCAAAATTTGCTCAACTTAGCCCACAAGAAAGGGCCAAAAGGAAAATGGAGAGCCTTGAAGCACTAAAGAAAACCTTTAAGAAGTTGGACCATGACGTAAAAATTCAAGATTTCTTAGGTTCAAGCAGTCAAACAATGGAGGAATTATCTCACCAAGTCAAGGTTTTACAAGCTCATATCACAGAAGTACAACAGAGACTGAGCTATTGGAATAATCTAGAGAAGATCAATAACTTAGAACATCTTAGACAAATGGAAGACTCACTACGGGAATCAATCAATCGAGTAAGCCTACAAAAAGAAAATTTAGGAAAGCACCAACTCATTTCACTGGAATGTGCTAACCAGTTGCAGGAAGGGATGACATTACCTTTGATGATGACAAGTTTACAAGAATCCCAACCTCTATCTTGGCTTTTGAATAATGATAATCATCAGTTGATGTTACCCAACGAACCAAAATTTCTATCCTTTAGTGATAATACCAATAGAGATGTTGAGTGCTCAACTGACATTTCACTCCCAAACTATTTTGGTCATATTGGGAGCAACAAACTTGAAGTTGGCAGTTCTCCCCAAGTCACTACTATGGGTCAAGGAGGTGGTACCATGAATGAGTTAAACGGAACTACTTACTTAAATGTACAACATTGTGACCAGTTTGCATACCCTCCTCCACCAGATATTGAGGAAGTGAAACATTTCCCTTCAATGGACAATAAATCGAACATTGTTGATTACCAAGTTAATAACAACTTTGATCTTCCCAGATCACTGTTTGAAAATGGACATCAATTTTGGAATTCTGCTTCTGGGTCATGTGGGATAGCCATGTATAATGAGAATGACTACCATAGGTAA	1125	0.3751	MLPTVGVSKILPSIFTLRAWMGRVKLKIKKLESISNRHVTYSKRKSGIIKKAKELSILCDIDIILLMFSPTGKPTLLQGERSNIEEVIAKFAQLSPQERAKRKMESLEALKKTFKKLDHDVKIQDFLGSSSQTMEELSHQVKVLQAHITEVQQRLSYWNNLEKINNLEHLRQMEDSLRESINRVSLQKENLGKHQLISLECANQLQEGMTLPLMMTSLQESQPLSWLLNNDNHQLMLPNEPKFLSFSDNTNRDVECSTDISLPNYFGHIGSNKLEVGSSPQVTTMGQGGGTMNELNGTTYLNVQHCDQFAYPPPPDIEEVKHFPSMDNKSNIVDYQVNNNFDLPRSLFENGHQFWNSASGSCGIAMYNENDYHR*	375

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gso17g0850	374	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	31	75	IPR002100	GO:0003677\|GO:0046983
Gso17g0850	374	PRINTS	MADS domain signature	23	43	IPR002100	GO:0003677\|GO:0046983
Gso17g0850	374	PRINTS	MADS domain signature	43	58	IPR002100	GO:0003677\|GO:0046983
Gso17g0850	374	PRINTS	MADS domain signature	58	79	IPR002100	GO:0003677\|GO:0046983
Gso17g0850	374	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	21	373	-	-
Gso17g0850	374	ProSiteProfiles	MADS-box domain profile.	21	73	IPR002100	GO:0003677\|GO:0046983
Gso17g0850	374	Coils	Coil	134	154	-	-
Gso17g0850	374	PANTHER	AGAMOUS-LIKE MADS-BOX PROTEIN AGL65	21	373	-	-
Gso17g0850	374	Gene3D	-	34	117	IPR036879	GO:0003677\|GO:0046983
Gso17g0850	374	SUPERFAMILY	SRF-like	22	115	IPR036879	GO:0003677\|GO:0046983

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso17g0850	Gso-Chr17	7968647	7973311	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso17g0850	21	296	Type I MADS-box Gene Family	AT2G03060	49.123	1.02e-85	263

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Gso17g0850		SRF-TF	5e-19	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso17g0850	-		-	pvu:PHAVU_003G189100g	634.409

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gso5g0214	5	2241057	2244051	Gso17g0850	17	7968647	7973311	GST

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