Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0850 ATGCTGCCAACAGTTGGTGTCTCAAAAATCTTACCGTCCATTTTCACGTTACGAGCTTGGATGGGAAGAGTTAAATTGAAGATCAAGAAATTAGAAAGCATAAGCAATCGGCATGTGACTTATTCAAAGCGAAAAAGTGGAATTATAAAAAAAGCAAAGGAATTATCAATACTGTGTGATATAGATATCATCCTTCTTATGTTTTCTCCAACAGGAAAGCCTACATTACTACAAGGAGAACGCAGCAATATTGAAGAGGTCATCGCAAAATTTGCTCAACTTAGCCCACAAGAAAGGGCCAAAAGGAAAATGGAGAGCCTTGAAGCACTAAAGAAAACCTTTAAGAAGTTGGACCATGACGTAAAAATTCAAGATTTCTTAGGTTCAAGCAGTCAAACAATGGAGGAATTATCTCACCAAGTCAAGGTTTTACAAGCTCATATCACAGAAGTACAACAGAGACTGAGCTATTGGAATAATCTAGAGAAGATCAATAACTTAGAACATCTTAGACAAATGGAAGACTCACTACGGGAATCAATCAATCGAGTAAGCCTACAAAAAGAAAATTTAGGAAAGCACCAACTCATTTCACTGGAATGTGCTAACCAGTTGCAGGAAGGGATGACATTACCTTTGATGATGACAAGTTTACAAGAATCCCAACCTCTATCTTGGCTTTTGAATAATGATAATCATCAGTTGATGTTACCCAACGAACCAAAATTTCTATCCTTTAGTGATAATACCAATAGAGATGTTGAGTGCTCAACTGACATTTCACTCCCAAACTATTTTGGTCATATTGGGAGCAACAAACTTGAAGTTGGCAGTTCTCCCCAAGTCACTACTATGGGTCAAGGAGGTGGTACCATGAATGAGTTAAACGGAACTACTTACTTAAATGTACAACATTGTGACCAGTTTGCATACCCTCCTCCACCAGATATTGAGGAAGTGAAACATTTCCCTTCAATGGACAATAAATCGAACATTGTTGATTACCAAGTTAATAACAACTTTGATCTTCCCAGATCACTGTTTGAAAATGGACATCAATTTTGGAATTCTGCTTCTGGGTCATGTGGGATAGCCATGTATAATGAGAATGACTACCATAGGTAA 1125 0.3751 MLPTVGVSKILPSIFTLRAWMGRVKLKIKKLESISNRHVTYSKRKSGIIKKAKELSILCDIDIILLMFSPTGKPTLLQGERSNIEEVIAKFAQLSPQERAKRKMESLEALKKTFKKLDHDVKIQDFLGSSSQTMEELSHQVKVLQAHITEVQQRLSYWNNLEKINNLEHLRQMEDSLRESINRVSLQKENLGKHQLISLECANQLQEGMTLPLMMTSLQESQPLSWLLNNDNHQLMLPNEPKFLSFSDNTNRDVECSTDISLPNYFGHIGSNKLEVGSSPQVTTMGQGGGTMNELNGTTYLNVQHCDQFAYPPPPDIEEVKHFPSMDNKSNIVDYQVNNNFDLPRSLFENGHQFWNSASGSCGIAMYNENDYHR* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0850 374 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 31 75 IPR002100 GO:0003677|GO:0046983
Gso17g0850 374 PRINTS MADS domain signature 23 43 IPR002100 GO:0003677|GO:0046983
Gso17g0850 374 PRINTS MADS domain signature 43 58 IPR002100 GO:0003677|GO:0046983
Gso17g0850 374 PRINTS MADS domain signature 58 79 IPR002100 GO:0003677|GO:0046983
Gso17g0850 374 PANTHER SERUM RESPONSE FACTOR HOMOLOG 21 373 - -
Gso17g0850 374 ProSiteProfiles MADS-box domain profile. 21 73 IPR002100 GO:0003677|GO:0046983
Gso17g0850 374 Coils Coil 134 154 - -
Gso17g0850 374 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 21 373 - -
Gso17g0850 374 Gene3D - 34 117 IPR036879 GO:0003677|GO:0046983
Gso17g0850 374 SUPERFAMILY SRF-like 22 115 IPR036879 GO:0003677|GO:0046983
Gso17g0850 374 SMART madsneu2 21 80 IPR002100 GO:0003677|GO:0046983
Gso17g0850 374 CDD MADS_SRF_like 22 104 IPR033897 GO:0000981|GO:0000987|GO:0045944
Gso17g0850 374 Coils Coil 97 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0850 Gso-Chr17 7968647 7973311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0850 21 296 Type I MADS-box Gene Family AT2G03060 49.123 1.02e-85 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso17g0850 SRF-TF 5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0850 - - pvu:PHAVU_003G189100g 634.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0214 5 2241057 2244051 Gso17g0850 17 7968647 7973311 GST