Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0842 ATGGAGTCTCAGTCACTCATGGGTTGGAGCTCTTTCTACGAAATAGATGAAAAACCATTTCCATTTACGTGCCAATTTTCTTACAGCGGAAACAGTGAAGTGTATCCCTCACTGGATTGGCCTTACGGTTTTCCCATACAAGACTACTATCTTGATGCTGTTCCTCTTATGGATTATTACCCTTCAGATCCATTATATGAAACATTAACACTCGCTACTACTGAACCAACACAAAGCGTGCAAGACTATGACTTTTATGACATTAAAAAGGGTTTATCTGGCTGGAACGAAGTTGATGCTGTGTTTGATTCACAAAAAGTATTTTTGTTTGGCAACAACGAAGAAAGTGGTGGGATCGAGAAGCAAATGATGGAAGAAGATGGAAAAGTGAACAACCAAGGGAGAGAAGAGAGAATCAACAATAGCAGTTGCAGAACGTTATCAAGGAAGACCATATCTCAGTACTTCTACATGCCAATATCACAAGCAGCCACAGAACTCAATGTGGGCATAACACTTCTGAAGAAAAGGTGCAGAGAGGTGGGTATTCGAAGGTGGCCCCACAGGAAGCTCATGAGCTTGCAAACTCTGATAAACAACGTGCAGGAGCTAGGGAAAGAGGAGGGGGGAGAGAGTGAAGAGAAGTTAAGAAGTGCGATTGAGATATTGGAGAGGGAAAAGAAGGTATTGGAGGAAATGCCAGATACTGAACTCGAAGACACTACAAAGAGGCTTAGACAAGCGTGTTTCAAGGCCAACTACAAGAAGAGGAAGCTCACAGTCACAGGGCGGAGGAAGGAACCACGCTCTTCTTCTTCTTCTTCTTTGCATTGA 834 0.4305 MESQSLMGWSSFYEIDEKPFPFTCQFSYSGNSEVYPSLDWPYGFPIQDYYLDAVPLMDYYPSDPLYETLTLATTEPTQSVQDYDFYDIKKGLSGWNEVDAVFDSQKVFLFGNNEESGGIEKQMMEEDGKVNNQGREERINNSSCRTLSRKTISQYFYMPISQAATELNVGITLLKKRCREVGIRRWPHRKLMSLQTLINNVQELGKEEGGESEEKLRSAIEILEREKKVLEEMPDTELEDTTKRLRQACFKANYKKRKLTVTGRRKEPRSSSSSSLH* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0842 277 ProSiteProfiles RWP-RK domain profile. 126 214 IPR003035 -
Gso17g0842 277 Coils Coil 213 233 - -
Gso17g0842 277 MobiDBLite consensus disorder prediction 257 277 - -
Gso17g0842 277 Pfam RWP-RK domain 147 194 IPR003035 -
Gso17g0842 277 PANTHER PROTEIN RKD4 34 274 IPR044607 GO:0003700
Gso17g0842 277 PANTHER PROTEIN RKD1-RELATED 34 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0842 Gso-Chr17 7929105 7930260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0842 142 258 AtRKD Transcription Factor Family AT1G18790 69.167 6.92e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gso17g0842 RWP-RK 2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0842 - - gmx:100810700 544.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0221 5 2288707 2289966 Gso17g0842 17 7929105 7930260 GST
Gso17g0842 17 7929105 7930260 Gso4g1415 4 41729916 41739862 PCT
Gso17g0842 17 7929105 7930260 Gso6g1637 6 17340184 17341504 PCT