Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0840 ATGCATAACATGGGGAGGCCACCTTGCTGTGACAAAATTGGGATTAAGAAAGGACCTTGGACTCCAGAAGAAGACATTAGCTTGGTGTCTTACATTCAAGAACATGGACCAGGAAATTGGAGAGCAGTTCCTACCAACACAGGTTTGATGAGATGCAGCAAGAGCTGCAGGCTTAGATGGACTAACTATCTTCGACCTGGTATCAAACGGGGTAATTTCACGGAACATGAAGAGAAGATGATAATCCACCTCCAAGCCCTATTGGGGAACAGATGGGCTGCAATAGCTTCATATCTTCCACAAAGGACAGACAACGACATAAAAAACTATTGGAACACCCATTTGAAGAAGAAGCTGAAACAAAGTGATCAAAGTGGGAGTGATGAAGGTGTTGACCACGAGGGACATTCTTCTTCTTCTTCTTCTAATTCACATCCAAAGGGTCAATGGGAGAGAAGACTTCAAACAGATATCCAAATGGCCAAGAAAGCCTTGTGTGATGCTTTGTCCCTTCACAAGCCAGCAACAGCAACAACAACAACCCTTGTTGTGCCTGATGATGCCACCAAACCTTCTTCAAGTTCTCATCATCAACCCTACAACCATGCATCATCCTCATATGCATCAAGCTACGAGAACATTTCACGATTGATGGAAAACTGGATGAAACCCCCAAACTCAACGAATAATTCACCAGGGTATTATTCTTCCTTCAGCAACATGGTCAATAATAATACTAGTACTACAGGATCCAGCTCTAGTGAGGGAGCACATAGCACCACTACCACTACAACACAAGATCAGGGTTTTGACTGCTTCTTGACCCTAAACTCCTCCAAACAGTACTATGGCTCTCCATCTCAGACGCAAGTGCCTCTTACTCTTCTGGAGAATTGGCTTTTTGATGATGGAGCTGCTCAGTGCCATGAAGATCTGATGAACATGTCCCTCGAAGAAAGTACCGCAGGTTTGTTTTAG 978 0.4397 MHNMGRPPCCDKIGIKKGPWTPEEDISLVSYIQEHGPGNWRAVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTEHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKQSDQSGSDEGVDHEGHSSSSSSNSHPKGQWERRLQTDIQMAKKALCDALSLHKPATATTTTLVVPDDATKPSSSSHHQPYNHASSSYASSYENISRLMENWMKPPNSTNNSPGYYSSFSNMVNNNTSTTGSSSSEGAHSTTTTTTQDQGFDCFLTLNSSKQYYGSPSQTQVPLTLLENWLFDDGAAQCHEDLMNMSLEESTAGLF* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0840 325 Gene3D - 16 69 - -
Gso17g0840 325 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Gso17g0840 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Gso17g0840 325 MobiDBLite consensus disorder prediction 118 135 - -
Gso17g0840 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Gso17g0840 325 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Gso17g0840 325 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Gso17g0840 325 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 310 - -
Gso17g0840 325 CDD SANT 72 115 IPR001005 -
Gso17g0840 325 CDD SANT 19 64 IPR001005 -
Gso17g0840 325 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Gso17g0840 325 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Gso17g0840 325 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 4 310 - -
Gso17g0840 325 Gene3D - 72 149 - -
Gso17g0840 325 SMART sant 69 117 IPR001005 -
Gso17g0840 325 SMART sant 16 66 IPR001005 -
Gso17g0840 325 MobiDBLite consensus disorder prediction 182 207 - -
Gso17g0840 325 MobiDBLite consensus disorder prediction 118 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0840 Gso-Chr17 7878560 7880592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0840 4 325 MYB Transcription Factor Family AT5G62470 50.000 6.34e-107 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso17g0840 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0840 K09422 - gmx:100812460 593.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0224 5 2333934 2335788 Gso17g0840 17 7878560 7880592 GST