Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0834 ATGGAGGGAGGCGACGATCTCCAGCACCACCATCGTCAGAACAACTTCCCATTCCAGCTACTTGAGAAGAAAGAAGACCAAGAAACCGCGTCATGCTCCACCTCCTCCCCTTACCCTTCCCTAGCAATCTCCGCGGAACCGAGCATGTCCAATTCCACCCGATCCAACCAGCTCTCGGCGGCCGAGGCTTCGGCGGAGGCGGCGAACAGCAAAAAGCCTCCGCCGAAGCGCACCTCGACGAAGGACCGGCACACGAAGGTGGACGGGCGCGGGCGGCGCATCCGAATGCCTGCCCTCTGCGCCGCCCGCGTCTTCCAGCTGACCCGCGAGCTGGGCCACAAGTCGGACGGCGAAACCATCGAGTGGCTCCTCCAGCAGGCGGAGCCCGCGGTGATCGCCGCCACTGGCACCGGCACCATCCCCGCCAACTTCACCTCCCTGAACATCTCCCTCCGCAGCTCCGGCTCCTCCATGTCCGTCCCCTCCCAGCTCCGGTCCTCCTACTTCAACCCCAACTTCTCCCTCCAACAACAACAACGTAGAACCTTCTTCCCCGGCATAGCCCTTTCCTCCGAACACAACACCACCACCAACAACACATCAACACTTGTCAATTTCCAACAATCCAACAACCTCACCACCACCATGCTGCAGCAGCAGGCCAAGCCGGAGCTTCGCGACGGCCTACCATCTTCCTTAGACATTTCAGACACAAGAACAAACACAGAAGACCCAAGCCGCAAAAGAAGACCAACTACAGAACAACAAGACCTATCCCCCACCACGCAGCAGCAGCACCACCAAATGGGAAGCTATCTCCTTCAATCTAGTGCAGGCGCTATTCCAGCGAGCCACGCCGCCAACATATGGATGGTGGCGAATTCAAACTCGAATCAGGTCATGAGTGGCGATCCCATGTGGACCTTCCCACCGGTTAACAACAGTGCTTTGTATCGGGGCACCATGTCCAGCGGCTTGCATTTCATGAATTTTCCAACGCCCATGGCGTTGTTGCCGAGTCAGCAACTAGGTTCTGCTGGGAATATTGGTGCTGTTCATGGAGGAAGCAGTAATAATAATAATCACAATAATAATATGAATGAAGCACATTTGAGTATGCTTGCAGGGCTTAGTCCTTATCGACCTGTTATTGGCGTTTCGGAATCTCAGCCGAGTGGCTCGCAATCGCATCGTGGAGGTGCCGATGATCGACATGATAATAGCTCCAGTCACCACTCCTAG 1242 0.5604 MEGGDDLQHHHRQNNFPFQLLEKKEDQETASCSTSSPYPSLAISAEPSMSNSTRSNQLSAAEASAEAANSKKPPPKRTSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSLQQQQRRTFFPGIALSSEHNTTTNNTSTLVNFQQSNNLTTTMLQQQAKPELRDGLPSSLDISDTRTNTEDPSRKRRPTTEQQDLSPTTQQQHHQMGSYLLQSSAGAIPASHAANIWMVANSNSNQVMSGDPMWTFPPVNNSALYRGTMSSGLHFMNFPTPMALLPSQQLGSAGNIGAVHGGSSNNNNHNNNMNEAHLSMLAGLSPYRPVIGVSESQPSGSQSHRGGADDRHDNSSSHHS* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0834 413 MobiDBLite consensus disorder prediction 398 413 - -
Gso17g0834 413 PANTHER TRANSCRIPTION FACTOR TCP14-LIKE 7 412 - -
Gso17g0834 413 MobiDBLite consensus disorder prediction 383 413 - -
Gso17g0834 413 MobiDBLite consensus disorder prediction 218 269 - -
Gso17g0834 413 MobiDBLite consensus disorder prediction 240 254 - -
Gso17g0834 413 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 7 412 IPR005333 GO:0003700
Gso17g0834 413 MobiDBLite consensus disorder prediction 30 64 - -
Gso17g0834 413 MobiDBLite consensus disorder prediction 1 92 - -
Gso17g0834 413 ProSiteProfiles TCP domain profile. 80 134 IPR017887 -
Gso17g0834 413 MobiDBLite consensus disorder prediction 255 269 - -
Gso17g0834 413 Pfam TCP family transcription factor 78 255 IPR017887 -
Gso17g0834 413 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0834 Gso-Chr17 7828907 7831750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0834 52 342 TCP Transcription Factor Family AT3G47620 50.442 2.38e-62 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Gso17g0834 TCP 1.4e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0834 - - gmx:100809776 740.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso5g0227 5 2385895 2387941 Gso17g0834 17 7828907 7831750 GST
Gso1g0393 1 5252477 5254623 Gso17g0834 17 7828907 7831750 PCT
Gso2g0887 2 10117806 10119765 Gso17g0834 17 7828907 7831750 PCT